Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,235,947 – 12,236,039 |
Length | 92 |
Max. P | 0.957513 |
Location | 12,235,947 – 12,236,039 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.14 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -25.74 |
Energy contribution | -25.30 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.47 |
Structure conservation index | 0.92 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12235947 92 - 22224390 UCAACAUC-------CAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCG--ACUAAAUGGAG ........-------....((....))(((((...)))))((((((((...........)))))...)))..(((((((((((....)--)))))))))). ( -26.10) >DroSim_CAF1 59660 92 - 1 UCAACAUC-------CAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCU--ACUAAAUGGGG ........-------....((....))(((((...)))))((((((((...........)))))...))).(..((((((((......--))))))))..) ( -25.70) >DroYak_CAF1 43609 101 - 1 UCAACUUUCAACUGGCAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCCAAACCAAAUGGAG ...........(((((...((....))(((((...))))))))))..............((((....)))).((((((((((((....)))))))))))). ( -32.20) >consensus UCAACAUC_______CAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCC__ACUAAAUGGAG ...................((....))(((((...)))))((((((((...........)))))...)))..((((((((((........)))))))))). (-25.74 = -25.30 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:16 2006