Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,233,094 – 12,233,199 |
Length | 105 |
Max. P | 0.636979 |
Location | 12,233,094 – 12,233,199 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -23.90 |
Energy contribution | -24.48 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.67 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12233094 105 - 22224390 ACGACGACCAAGAAGGCGUCGCAGUCGCUGUUGCAGUCG------------ACGUUUGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCAAGACUU .(((((.((.....))))))).((((..((((((.((((------------(((....)))))))......((((...((........))...))))........)))))).)))). ( -39.20) >DroSec_CAF1 55619 105 - 1 ACGACGACCAAGAAGGCGUCGCAGUCGCAGUUGCAGUCG------------ACGUCCGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAUAUGGCCAAAAAGAGCAGCAAGACUU .(((((.((.....))))))).((((...(((((.((((------------(((....)))))))......((((...((........))...))))........)))))..)))). ( -37.30) >DroSim_CAF1 56899 105 - 1 ACGACGACCAAGAAGGCGUCGCAGUCGCAGUUGCAGUCG------------ACGUCCGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCAAGACUU .(((((.((.....))))))).((((...(((((.((((------------(((....)))))))......((((...((........))...))))........)))))..)))). ( -37.30) >DroEre_CAF1 53293 117 - 1 ACGACGACCAAGAAGGCGUCGCAGUCGCAGUCGCAGUCGCAGCCGCAGUCGACGUCCACGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCCAGAGUU .(((((.((.....)))))))..(((((....))...(((.((.((.(((((((....)))))))...)).))..))).............)))(((...........)))...... ( -34.30) >DroYak_CAF1 40707 105 - 1 ACGACGACCAAGAAGGCGUCGCAGUUGCAGUCGCAGUCGCAGUCGCAGUCGA------------CGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCGGCAAGAGUU ..((((.((.....))))))((..((((....))))..)).((((....)))------------)(((((.((((...((........))...))))(.....).)))))....... ( -29.80) >consensus ACGACGACCAAGAAGGCGUCGCAGUCGCAGUUGCAGUCG____________ACGUCCGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCAAGACUU .(((((.((.....))))))).((((...(((((.................(((((......)))))....((((...((........))...))))........)))))..)))). (-23.90 = -24.48 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:15 2006