Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,220,705 – 12,220,821 |
Length | 116 |
Max. P | 0.608728 |
Location | 12,220,705 – 12,220,821 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.09 |
Mean single sequence MFE | -23.72 |
Consensus MFE | -11.86 |
Energy contribution | -12.98 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.23 |
Mean z-score | -1.80 |
Structure conservation index | 0.50 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12220705 116 + 22224390 AAUGCCUAGCAAUGAGAAGCUAAAAUACAAGUA----CAGUUGCUAGCCGUUAAGUAGUUAUAAAGCAUGUUGAACAGCAGUGAUGACAGUCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ......((((........)))).........((----((((((((.((((....(..(((((...((.((((....)))))).)))))...)....))))))))).)))))......... ( -28.80) >DroSec_CAF1 43546 98 + 1 AAUGCCUAGC------------------AAGUA----CAGUCGCUAGCCGAUAAGUAGUUAUAAAGCAUGUUGAACAACGUCGAUAACAGCCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ..(((...))------------------)..((----(((..(((.((((((..((.(((((...(.(((((....)))))).))))).))...)))))))))...)))))......... ( -26.20) >DroSim_CAF1 45368 98 + 1 AAUGCCUAGC------------------AAGUA----CAGUCGCUAGCCGAUAAGUAGUUAUAAAGCAUGUUGAACAACGUCGAUGACAGCCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ..(((...))------------------)..((----(((..(((.((((((..((.(((((...(.(((((....)))))).))))).))...)))))))))...)))))......... ( -26.30) >DroEre_CAF1 40808 105 + 1 AAAGC-----------GACCUAAAAUGCAAGUA----UAAUCGCUGGCCGAUAAGUAGUUAUAAAGCAUGUAGAACCACGUUGAUGACAGCAGAAUCGGCAGCAAUCUGAAAAUAUAAAC ...((-----------(........))).....----.....((((.(((((..((.(((((..(((.((......)).))).))))).))...)))))))))................. ( -19.80) >DroYak_CAF1 28345 115 + 1 AAAGCCUAGCAAUGAGCACCUAAAAUGCAAGUAUCUAUAAUCU-----CCAUAUGUAGUUAUAAAGCAUGUAGCACAACGUUGAUGACAGCAGAAUCGGUGGCAAUCUGUAAAUAUAAAU ...(((..((.....))(((....((((..(((.(((((....-----.....))))).)))...))))..........((((....))))......))))))................. ( -17.50) >consensus AAUGCCUAGC_______A_CUAAAAU_CAAGUA____CAGUCGCUAGCCGAUAAGUAGUUAUAAAGCAUGUUGAACAACGUUGAUGACAGCCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ..........................................(((.((((((..((.(((((...(.(((((....)))))).))))).))...)))))))))................. (-11.86 = -12.98 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:08 2006