Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,215,745 – 12,215,847 |
Length | 102 |
Max. P | 0.686757 |
Location | 12,215,745 – 12,215,847 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 74.85 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -11.06 |
Energy contribution | -11.06 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -2.14 |
Structure conservation index | 0.52 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12215745 102 + 22224390 AAUAGUCCAUGGAUUAGCAUUAGCAAAAAGGUUGUCUAGAAAAAC----------------AAACAAAUCGAUCUAGUUAGCCGAUCGAUCGGUCGCGCCAUUAGGCGCGAGAAUCCA .........((((((..(...........(((((.(((((.....----------------...........))))).)))))((((....))))(((((....))))))..)))))) ( -30.39) >DroSec_CAF1 42461 106 + 1 AAUAGUCC-UGGAUUACCAUUAGCAAAAAGUUUGUCUAGAAAAACAACUAAUAUAGACAACAAACAAAUAUACCUACUUAGUCUUUUUA-----------AUAAGGCGCGAGAAUCCA ........-.(((((.......((.....(((.(((((...............))))))))...................(((((....-----------..)))))))...))))). ( -16.96) >DroSim_CAF1 44253 106 + 1 AAUAGUCC-UGGAUUAGCAUUAGCAAAAAGCUUGUCUAGAAAAACAACUAAUAUUGACAACAAACAAAUAUACCUACUUAGCCUUUUUA-----------AUAAGGCACGAGAAACCA .......(-(((((.(((...........))).)))))).....................................(((.(((((....-----------..)))))..)))...... ( -16.20) >consensus AAUAGUCC_UGGAUUAGCAUUAGCAAAAAGCUUGUCUAGAAAAACAACUAAUAU_GACAACAAACAAAUAUACCUACUUAGCCUUUUUA___________AUAAGGCGCGAGAAUCCA ..........(((((..(.(((((((.....))).)))).........................................(((((.................)))))..)..))))). (-11.06 = -11.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:07 2006