Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,201,197 – 12,201,305 |
Length | 108 |
Max. P | 0.982585 |
Location | 12,201,197 – 12,201,305 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.11 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -25.88 |
Energy contribution | -26.72 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.93 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12201197 108 - 22224390 GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------ ((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40) >DroSec_CAF1 27508 108 - 1 GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------ ((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40) >DroSim_CAF1 28692 108 - 1 GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------ ((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40) >DroEre_CAF1 26693 108 - 1 GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------ ((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40) >DroYak_CAF1 12344 108 - 1 GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCUGGGCCU------------ ((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.70) >DroAna_CAF1 41507 116 - 1 CGGCCGCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCG----CAGGGCCUCCUACCAACCCC .((((((..((((....)))).))((((((((((..(((((....)))))....))))))))))((((((((.....(((.....)))..)))).)----)))))))............. ( -24.50) >consensus GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU____________ .(((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).)))))............. (-25.88 = -26.72 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:51 2006