Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,374,733 – 1,374,851 |
Length | 118 |
Max. P | 0.818008 |
Location | 1,374,733 – 1,374,851 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.85 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -20.88 |
Energy contribution | -22.82 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.17 |
Mean z-score | -2.00 |
Structure conservation index | 0.58 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1374733 118 + 22224390 CUGUUGGCCUGGUGUCUAGAAUAGAGAAA--CAUGCAAUUUUGAAGACGGCCGUGGCCAGUUUUCUCGGCCAAAUUGAGUAAAAUUUCGAGUCGUGGUACCAGGCGAACAGAAAUGCCAG (((((.((((((((.(((((...((((..--....((((((.(((((((((....))).))))))......)))))).......))))...)).))))))))))).)))))......... ( -41.42) >DroSec_CAF1 6769 118 + 1 CUGUUGGCCUAGUGUCUAGAAUCAGGAAA--CAUGCAAUUUUGAAGACUGCCGUGGCCAGUUUUCUCGGCCAAAUUGAGUAAAAUAUCCAGUCGAGGUACCAGGCGAACAGAAAUGUCAG (((((.((((.((..((.......(....--).............(((((...(((((((....)).)))))....((........))))))).))..)).)))).)))))......... ( -35.70) >DroSim_CAF1 7501 118 + 1 CUGUUGGCCUAGUGUCUAGAAUCAGGAAA--CAUGCAAUUUUGAAGACGGCCGUGGCCAGUUUUCUCGGCCAAAUUGAGUAAAAUAUCCAGUCGAGGUACCAGGCGAACAGAAAUGUCAG (((((.((((.((..((.......(....--).............((((((....))).((((((((((.....))))).))))).....))).))..)).)))).)))))......... ( -35.20) >DroEre_CAF1 5549 116 + 1 AUGAUCGCCUGGUGCAACAAUUAAUGAAAACUAUGAAAAUCGGA---CGUUUGAUCCGAGUUUUCUUGGGUAAAUUGAG-AGAUUCUGGGUUUCAGAUAACAGGCGAACAGAAAUGUCAG ....(((((((......(..(((((.....(((.((((((((((---.......))))).))))).)))....))))).-.)..((((.....))))...)))))))(((....)))... ( -30.50) >consensus CUGUUGGCCUAGUGUCUAGAAUAAGGAAA__CAUGCAAUUUUGAAGACGGCCGUGGCCAGUUUUCUCGGCCAAAUUGAGUAAAAUAUCCAGUCGAGGUACCAGGCGAACAGAAAUGUCAG (((((.(((((((((((.((....(((.......((.............))..(((((((....)).)))))..............)))..)).))))))))))).)))))......... (-20.88 = -22.82 + 1.94)
Location | 1,374,733 – 1,374,851 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.85 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -18.79 |
Energy contribution | -20.23 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.14 |
Mean z-score | -2.01 |
Structure conservation index | 0.61 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1374733 118 - 22224390 CUGGCAUUUCUGUUCGCCUGGUACCACGACUCGAAAUUUUACUCAAUUUGGCCGAGAAAACUGGCCACGGCCGUCUUCAAAAUUGCAUG--UUUCUCUAUUCUAGACACCAGGCCAACAG .........(((((.(((((((..........(((((......((((((....((((....((((....))))))))..))))))...)--))))((((...)))).))))))).))))) ( -30.70) >DroSec_CAF1 6769 118 - 1 CUGACAUUUCUGUUCGCCUGGUACCUCGACUGGAUAUUUUACUCAAUUUGGCCGAGAAAACUGGCCACGGCAGUCUUCAAAAUUGCAUG--UUUCCUGAUUCUAGACACUAGGCCAACAG .........(((((.(((((((..((.((..(((..............((((((.......))))))..(((((.......)))))...--..)))....)).))..))))))).))))) ( -32.20) >DroSim_CAF1 7501 118 - 1 CUGACAUUUCUGUUCGCCUGGUACCUCGACUGGAUAUUUUACUCAAUUUGGCCGAGAAAACUGGCCACGGCCGUCUUCAAAAUUGCAUG--UUUCCUGAUUCUAGACACUAGGCCAACAG .........(((((.(((((((..((((.(..(((..........)))..).))))......(((....)))(((((((((((.....)--)))..)))....))))))))))).))))) ( -32.60) >DroEre_CAF1 5549 116 - 1 CUGACAUUUCUGUUCGCCUGUUAUCUGAAACCCAGAAUCU-CUCAAUUUACCCAAGAAAACUCGGAUCAAACG---UCCGAUUUUCAUAGUUUUCAUUAAUUGUUGCACCAGGCGAUCAU ..........((.(((((((...((((.....))))....-..............(((((.((((((.....)---))))))))))((((((......)))))).....))))))).)). ( -27.30) >consensus CUGACAUUUCUGUUCGCCUGGUACCUCGACUCGAUAUUUUACUCAAUUUGGCCGAGAAAACUGGCCACGGCCGUCUUCAAAAUUGCAUG__UUUCCUGAUUCUAGACACCAGGCCAACAG .........(((((.(((((((..........................((((((.......)))))).....((((...........................))))))))))).))))) (-18.79 = -20.23 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:16 2006