Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,188,210 – 12,188,321 |
Length | 111 |
Max. P | 0.630792 |
Location | 12,188,210 – 12,188,321 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.37 |
Mean single sequence MFE | -35.25 |
Consensus MFE | -29.90 |
Energy contribution | -30.03 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.05 |
Mean z-score | -1.68 |
Structure conservation index | 0.85 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12188210 111 + 22224390 ------GGCGGGUCCUUGAGAGACUGGGG---CGCCAAAUGAAGUGACAGGCAACUUAACGCAUUUAAAUUAAUUAAAAAUGUGCUUAAGAUGUUUUCGACUCGCUUUGGCGACGAUGCG ------.(((.(((((.........))))---)(((((((((..(((.(((((.((((((((((((...........))))))).))))).))))))))..))).)))))).....))). ( -32.50) >DroSec_CAF1 14541 111 + 1 ------GGCGGGUCCUUGAGAGACUGGGG---CGCCAAAUGAAGUGACAGGCAACUUAACGCAUUUAAAUUAAUUAAAAAUGUGCUUAAGAUGUUUUCGACUCGCUUUGGCGACGAUGCG ------.(((.(((((.........))))---)(((((((((..(((.(((((.((((((((((((...........))))))).))))).))))))))..))).)))))).....))). ( -32.50) >DroEre_CAF1 14515 111 + 1 ------GGCGGGUCCUUGAGAGACUGGGG---CGCCAAAUGAAGUGACAGGCAACUUAACGCAUUUAAAUUAAUUAAAAAUGUGCUUAAGAUGUUUUCGACUCGCUUUGGCGACGAUGCG ------.(((.(((((.........))))---)(((((((((..(((.(((((.((((((((((((...........))))))).))))).))))))))..))).)))))).....))). ( -32.50) >DroAna_CAF1 27244 120 + 1 UGUCCUGGUGGGUCCUUGAGAGACUGGGGGCCCGCCAAAUGAAGUGACAGGCAACUUAGCGCAUUUAAAUUAAUUAAAAAUGUGCUUAAGAUGUUUUCGACUCGCGAUGGCGACGAUGCG .(((.((((((((((((........))))))))))))........((.(((((.((((((((((((...........)))))))).)))).)))))))))).((((.((....)).)))) ( -43.50) >consensus ______GGCGGGUCCUUGAGAGACUGGGG___CGCCAAAUGAAGUGACAGGCAACUUAACGCAUUUAAAUUAAUUAAAAAUGUGCUUAAGAUGUUUUCGACUCGCUUUGGCGACGAUGCG .......((((((((....).)))).......((((((((((..(((.(((((.((((((((((((...........))))))).))))).))))))))..))).)))))))....))). (-29.90 = -30.03 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:28 2006