Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,169,515 – 12,169,614 |
Length | 99 |
Max. P | 0.998247 |
Location | 12,169,515 – 12,169,614 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.39 |
Mean single sequence MFE | -34.46 |
Consensus MFE | -24.37 |
Energy contribution | -24.70 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.71 |
SVM decision value | 3.05 |
SVM RNA-class probability | 0.998247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12169515 99 - 22224390 GGCGUGGCCAAAUCUUUUGGCAAAA------------GCCGGAGCGACCCACA----CCUCAGCCCCCUCAAAACGCAUUUGGCAUGCAUGUGUGUCAACGCUCUGGCCAAAACA----- (...(((((((.....)))))....------------(((((((((...((((----(..(((((................))).))...)))))....)))))))))))...).----- ( -32.39) >DroEre_CAF1 21885 87 - 1 ------GCCAAAUCUUUUGGCAA-----------GUCGCCGGAGCGACCCACCGCCC-----------CCAAAACGCAUUUGGCAUGCAUGUGUGUCAACGCUCUGGCCAAGACA----- ------(((((.....)))))..-----------((((((((((((((.(((.((..-----------(((((.....)))))...))..))).)))...))))))))...))).----- ( -33.50) >DroYak_CAF1 22484 120 - 1 GGCCUGGCCAAAUCUUUUGGCAAAAGCCGGAGACGGAGCAGGAGCGACCCUCAGCCUCCUUAGUCCCCACAAAACGCAUUCGGCAUGCAUGUGUGUCAACGCUCUGGCCAAGACAGCUGC (((.(((((.....(((((((....)))))))..(((((((((((........).)))))..((...((((....((((.....))))...))))...)))))))))))).....))).. ( -37.50) >consensus GGC_UGGCCAAAUCUUUUGGCAAAA_________G__GCCGGAGCGACCCACAGCC_CCU_AG_CCCCACAAAACGCAUUUGGCAUGCAUGUGUGUCAACGCUCUGGCCAAGACA_____ ......(((((.....)))))................(((((((((.............................((((.....)))).((.....)).)))))))))............ (-24.37 = -24.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:13 2006