Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,151,269 – 12,151,389 |
Length | 120 |
Max. P | 0.747787 |
Location | 12,151,269 – 12,151,389 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.07 |
Mean single sequence MFE | -35.95 |
Consensus MFE | -31.80 |
Energy contribution | -31.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.88 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12151269 120 - 22224390 UUCCCCACUUCCCCCACUUCCCCACAGCCAACAGCUUGCCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC ........................((((.....(((((....((((.(.((((...(((((((.......)))))))((((.....)))))))).).))))....)))))))))...... ( -34.60) >DroSec_CAF1 4542 106 - 1 CCCGCCACUCCCCCGACCU--------------GGUUGUCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC ...............((((--------------((.((((((...((..((((...(((((((.......)))))))((((.....)))))))).)))))))).))))))(((....))) ( -38.70) >DroSim_CAF1 6202 106 - 1 CCCGCCACUCCCCCGACCU--------------GGUUGUCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC ...............((((--------------((.((((((...((..((((...(((((((.......)))))))((((.....)))))))).)))))))).))))))(((....))) ( -38.70) >DroYak_CAF1 4406 95 - 1 CCCACCACCACCA-A------------------------CCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC .............-.------------------------.....((((((.(((.((((((((.......))))))))))).....(((((......)))))...))))))......... ( -31.80) >consensus CCCGCCACUCCCCCGACCU______________GGUUGUCCACCCACCUGAGUCUCGGCAAAGAUGACCCUUUUGCCGGGCAUGGCGCCCACUCCGUUGGGCAUCCAGGUGCUGAUCAGC ............................................((((((.(((.((((((((.......))))))))))).....(((((......)))))...))))))......... (-31.80 = -31.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:07 2006