Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,137,521 – 12,137,627 |
Length | 106 |
Max. P | 0.671401 |
Location | 12,137,521 – 12,137,627 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -32.72 |
Consensus MFE | -17.10 |
Energy contribution | -17.73 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.20 |
Mean z-score | -2.39 |
Structure conservation index | 0.52 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12137521 106 - 22224390 AGAAAGC--GCUGGGAAAAGGGGUUGCAAC-CGAGCAACUCUCUGUGUUGGCGAC---AACCCUGCAUCCACCGCUGCACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA (((((((--((((((....((((((((...-...)))))))).(((((((....)---)))..((((........))))......)))....))))))).))))))...... ( -36.00) >DroSec_CAF1 10724 107 - 1 AGGAAGGCGGUUGGGAAAAGGGGUUGCCAC-CGAGCAACUCU----GUUGGCGACAACAACCCUGCAUCCAACCCUGCACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA .((((((((((((((...(((((((((...-...)))))..(----((((....))))).))))...)))))))..((..................))).))))))...... ( -33.87) >DroEre_CAF1 10483 89 - 1 AGAAGGC--GGCGGAA-AAGGGGUUGUCGC-CGAGGAACUCU----GUUGGCGAC---AACCCUGCACC------------ACCCACAAUAAUCCAGCGACUUUCUCCAGUA ((((((.--.(((((.-..(((((((((((-(((((....))----.))))))))---)))))).....------------...........))).))..))))))...... ( -33.71) >DroYak_CAF1 7211 101 - 1 AGAAAGC--GGCGGAAAAAGGGGUUGCCACCCCAGGAACUCU----GUAGGCGAC---AACCCUGCACC--ACCCCACACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA ((((((.--.(((((....(((((....))))).((.....(----(((((.(..---..)))))))..--...))................))).))..))))))...... ( -27.30) >consensus AGAAAGC__GGCGGAAAAAGGGGUUGCCAC_CGAGCAACUCU____GUUGGCGAC___AACCCUGCACC__ACCCUGCACCACCCACAAUAAUCCAGCGACUUUCUCCAGUA ((((((...((((((....((((((((.......))))))))....((.((.(.......))).))..........................))))))..))))))...... (-17.10 = -17.73 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:02 2006