Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,365,514 – 1,365,613 |
Length | 99 |
Max. P | 0.973722 |
Location | 1,365,514 – 1,365,613 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 79.47 |
Mean single sequence MFE | -33.07 |
Consensus MFE | -23.92 |
Energy contribution | -23.93 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.19 |
Mean z-score | -2.27 |
Structure conservation index | 0.72 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1365514 99 + 22224390 ----------------UGAUUCAGACUCUGGUGCUGUGGCUAAGGCUCAGGCUGCCUUAGCUUUCUCUGGCUUUCGCUUCUUACGCACGGUGUAGCCAUUUGCCAAUUGAAUGCU ----------------..((((((....((((.....(((((((((.......))))))))).....(((((..((((..........)))).)))))...)))).))))))... ( -29.90) >DroSec_CAF1 25680 108 + 1 ----UGAUUCAGUUUCUGAUUCAGACUCUGGUACUGUGGCUAAGGCUCA---UGCCUUAGCUUUCUCUGGCUUUCGCUUCUUACGCACGAGGUAGCCACUUGCCAAUUGAAUUCU ----.(((((((((((((...))))....((((....(((((((((...---.))))))))).....(((((...(((((........))))))))))..))))))))))))).. ( -36.00) >DroEre_CAF1 26111 115 + 1 AUUCUGAUUCAGAUUCCGAUUCAAACUCUGAUGCUGUGGCUAAGGCCCAGGCUGCCUUGGCUUUCUCUAGCUUUGGCUUCUUACGCACGGCGUCACCACUUGCCAAUUGAAUGUU ..((((...))))...((((((((....(((((((((((.((((((....)).(((..((((......))))..)))..))))).))))))))))....)))..)))))...... ( -33.30) >consensus ____UGAUUCAG_UUCUGAUUCAGACUCUGGUGCUGUGGCUAAGGCUCAGGCUGCCUUAGCUUUCUCUGGCUUUCGCUUCUUACGCACGGCGUAGCCACUUGCCAAUUGAAUGCU ..................((((((....((((((((((((((((((.......)))))))).......(((....))).......))))))...))))........))))))... (-23.92 = -23.93 + 0.01)
Location | 1,365,514 – 1,365,613 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.47 |
Mean single sequence MFE | -30.03 |
Consensus MFE | -23.45 |
Energy contribution | -22.90 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.17 |
Mean z-score | -1.73 |
Structure conservation index | 0.78 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1365514 99 - 22224390 AGCAUUCAAUUGGCAAAUGGCUACACCGUGCGUAAGAAGCGAAAGCCAGAGAAAGCUAAGGCAGCCUGAGCCUUAGCCACAGCACCAGAGUCUGAAUCA---------------- .(.(((((..((((.....))))....((((.......((....))........((((((((.......))))))))....)))).......)))))).---------------- ( -28.50) >DroSec_CAF1 25680 108 - 1 AGAAUUCAAUUGGCAAGUGGCUACCUCGUGCGUAAGAAGCGAAAGCCAGAGAAAGCUAAGGCA---UGAGCCUUAGCCACAGUACCAGAGUCUGAAUCAGAAACUGAAUCA---- .((.((((.((((...(((((((.(((((((.(.((..((....)).........)).).)))---))))...)))))))....))))..((((...))))...)))))).---- ( -31.80) >DroEre_CAF1 26111 115 - 1 AACAUUCAAUUGGCAAGUGGUGACGCCGUGCGUAAGAAGCCAAAGCUAGAGAAAGCCAAGGCAGCCUGGGCCUUAGCCACAGCAUCAGAGUUUGAAUCGGAAUCUGAAUCAGAAU ...((((.....(((.(((....)))..)))....((.(((...(((......)))...))).((.(((((....))).)))).(((((.((((...)))).))))).)).)))) ( -29.80) >consensus AGCAUUCAAUUGGCAAGUGGCUACACCGUGCGUAAGAAGCGAAAGCCAGAGAAAGCUAAGGCAGCCUGAGCCUUAGCCACAGCACCAGAGUCUGAAUCAGAA_CUGAAUCA____ ...(((((...(((....((.....))((((.......((....))........((((((((.......))))))))....))))....)))))))).................. (-23.45 = -22.90 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:10 2006