Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,065,569 – 12,065,666 |
Length | 97 |
Max. P | 0.658535 |
Location | 12,065,569 – 12,065,666 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 88.58 |
Mean single sequence MFE | -20.03 |
Consensus MFE | -14.79 |
Energy contribution | -17.73 |
Covariance contribution | 2.95 |
Combinations/Pair | 1.05 |
Mean z-score | -2.38 |
Structure conservation index | 0.74 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12065569 97 + 22224390 UGAAAAAAGGAUAAAAUAUAUCUGUGUGUGUAUGCAGAUGGAGGCGAAGAGCGAAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU ........(((((.....(((((((((....)))))))))...((.....))..............))))).........((((....))))..... ( -21.60) >DroEre_CAF1 1336 84 + 1 UGAAAAAAGGAUAAAAU--AUCUGUGUGUAUAUGCAGAUGGA-----------GAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU ........((......(--((((((((....)))))))))..-----------...((((......))))))........((((....))))..... ( -17.30) >DroYak_CAF1 1188 95 + 1 UGAAAAAAGGAUAAAAU--AUCUAUGUGUAUAUGCAGAUGGAGGCGAAGAGCAGAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU ........(((((....--.(((((.(((....))).))))).((.....))..............))))).........((((....))))..... ( -21.20) >consensus UGAAAAAAGGAUAAAAU__AUCUGUGUGUAUAUGCAGAUGGAGGCGAAGAGC_GAUGAUAAAGAAAUGUCCCAUAUAGAGCGGCGUGAGUCGAGUGU ........(((((.......(((((.(((....))).))))).((.....))..............))))).........((((....))))..... (-14.79 = -17.73 + 2.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:18 2006