Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,063,123 – 12,063,256 |
Length | 133 |
Max. P | 0.984143 |
Location | 12,063,123 – 12,063,221 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.66 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -19.20 |
Energy contribution | -20.40 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.87 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12063123 98 - 22224390 GCCAGCG----GCCGGCAAAACACUCUUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAAGAACGAUUGCAUUUGCCUAAUCUGUAUCUGUUAA (((....----...)))............((((---.(.(((((((((((.((((((((((((...)).))))))))))))))))).)))).).))))....... ( -24.50) >DroSec_CAF1 94597 98 - 1 GCCAGCG----GCUGGCAAAACACUCUUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUGCAUUUGCCUAAUCUGUAUCUGUUAC (((((..----.)))))............((((---.(.(((((((((((.(((((((.((((...)).)).)))))))))))))).)))).).))))....... ( -23.80) >DroSim_CAF1 71640 98 - 1 GCCAGCG----GCUGGCAAAACACUCUUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUGCAUUUGCCUAAUCUGUAUCUGUUAC (((((..----.)))))............((((---.(.(((((((((((.(((((((.((((...)).)).)))))))))))))).)))).).))))....... ( -23.80) >DroEre_CAF1 92236 98 - 1 GCCAGCG----ACUGGCAAAACUCUCCUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGAUAACAACGAUUGCAUUUGCGUAAUCUGUAUCUGUUAC (((((..----.))))).........(..((((---.(.(((((((((((.(((((((..((....))....))))))))))))))).))).).))))..).... ( -22.60) >DroYak_CAF1 94506 105 - 1 UCCAGCGGCCAACUGGCAAAACACUCUUAAUACCACCACUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUGCAUUUCCCUAAUCUGUAUCUGUUAC .((((.((((....)))...................((.(((((....))))).)).......)))))((((((((((((........))))).))...))))). ( -15.40) >consensus GCCAGCG____GCUGGCAAAACACUCUUAAUAC___CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUGCAUUUGCCUAAUCUGUAUCUGUUAC ((((((.....)))))).........................((((((((.(((((((.((.(....).)).))))))))))))))).................. (-19.20 = -20.40 + 1.20)
Location | 12,063,148 – 12,063,256 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 92.69 |
Mean single sequence MFE | -17.21 |
Consensus MFE | -13.94 |
Energy contribution | -15.34 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.81 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12063148 108 - 22224390 AAAAAUUCCAACAAUUUCCCUAAUUUCCCACAUUUGCCAGCG----GCCGGCAAAACACUCUUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAAGAACGAUUG .............................((((((((.((((----(....................)---))))..))))))))(((((((((((((...)).))))))))))) ( -21.85) >DroSec_CAF1 94622 108 - 1 AAAAAUUCCAACAUUUUCCCUAAUUUCCCACAUUUGCCAGCG----GCUGGCAAAACACUCUUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUG .............................((((((((.((((----(....................)---))))..))))))))((((((((.((((...)).)).)))))))) ( -18.25) >DroSim_CAF1 71665 108 - 1 AAAAAUUGCAACAUUUUCCCUAAUUUCCCACAUUUGCCAGCG----GCUGGCAAAACACUCUUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUG .............................((((((((.((((----(....................)---))))..))))))))((((((((.((((...)).)).)))))))) ( -18.25) >DroEre_CAF1 92261 108 - 1 AAAAAUUCAAACAUUUUCCCUAAUUUCCCACAUUUGCCAGCG----ACUGGCAAAACUCUCCUAAUAC---CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGAUAACAACGAUUG .........(((((((................((((((((..----.))))))))......((((...---...)))).)))))))(((((((..((....))....))))))). ( -15.60) >DroYak_CAF1 94531 115 - 1 AAAAAUUCUAACAUUUCCCCUAAUUUCCCACAUUUUCCAGCGGCCAACUGGCAAAACACUCUUAAUACCACCACUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUG ....................................((((.((((....)))...................((.(((((....))))).)).......)))))............ ( -12.10) >consensus AAAAAUUCCAACAUUUUCCCUAAUUUCCCACAUUUGCCAGCG____GCUGGCAAAACACUCUUAAUAC___CGCUUAGCAAAUGUUAAUUGUUUUUCCCCUGGUAACAACGAUUG .........(((((((................(((((((((.....))))))))).................((...)))))))))(((((((.((.(....).)).))))))). (-13.94 = -15.34 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:11 2006