Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,055,224 – 12,055,317 |
Length | 93 |
Max. P | 0.616474 |
Location | 12,055,224 – 12,055,317 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.40 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -20.23 |
Energy contribution | -20.48 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -1.54 |
Structure conservation index | 0.82 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12055224 93 - 22224390 GACGAUUCCCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCGCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC (((((((..((.(((..(((((........))))).))).))..))))(((.....)))))).......(((((((........))))))).. ( -27.80) >DroSec_CAF1 86891 93 - 1 GGCGAUUCCCAACUUGAAAACCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCGCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC (((((((..((.(((.....((........))....))).))..))))(((.....)))))).......(((((((........))))))).. ( -20.80) >DroEre_CAF1 84549 83 - 1 GGCGAUCCCCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAU----------CGUUUUGCAUUCGAAAUGAGAUGCAAUC ..(((((..((.(((..(((((........))))).))).))..)))))((...(----------(((((((....))))))))...)).... ( -24.50) >DroYak_CAF1 86700 93 - 1 GGCCAUCCUCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCCCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC .((.(((.(((..(((((((((........)))))....((((((((((((........))))))))....))))))))..)))))))).... ( -25.30) >consensus GGCGAUCCCCAACUUGAAAGCCUUGUAACUGGCUUAAAGAUGUUGAUCGGCUUAUCGCCGUCGAUCGUUUUGCAUUCGAAAUGAGAUGCAAUC (.(((((..((.(((..(((((........))))).))).))..))))).)..................(((((((........))))))).. (-20.23 = -20.48 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:05 2006