Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,041,620 – 12,041,714 |
Length | 94 |
Max. P | 0.900581 |
Location | 12,041,620 – 12,041,714 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 71.53 |
Mean single sequence MFE | -15.48 |
Consensus MFE | -5.07 |
Energy contribution | -7.35 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.30 |
Structure conservation index | 0.33 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12041620 94 + 22224390 AAAACCUUGAAUUGAAAAAUUCGCAAA-A----------CAAAAAUAUGCCUGCAAAGAUAUGUGCAAGUUGCACUGUUCAA--AAAUAGGGGC-A------UAAACUAAAGGA ....(((((((((....))))).....-.----------......(((((((.....((...((((.....))))...))..--......))))-)------)).....)))). ( -22.02) >DroPse_CAF1 176340 96 + 1 AAAACCUUGAAUUGAAAAAUUCCAAAAAAAAAGAAACCAAAAAAAUAUGCCUGCAAAAAUAUGUAUCUGUAGAUGUGU---A--AAGGAGGAGU-A------U---CUGUA--- ....(((((((((....)))))......................((((..(((((............)))))..))))---.--...))))...-.------.---.....--- ( -13.20) >DroSec_CAF1 73622 94 + 1 AAAACCUUGAAUUGAAAAAUUCCCAAA-A----------CAAAAAUAUGCCUGCAAAAAUAUGUGCAAAUUGCACUGCCCAA--AAAUAGGGUC-A------UAAACUAAAGAA .....((((((((....))))).....-.----------......(((((((..........((((.....)))).......--.....))).)-)------)).....))).. ( -14.45) >DroEre_CAF1 71094 97 + 1 AAAACCUUGAAUUGAAAAAUUCCCUAA-A----------CAUAAAUAUGCCCGCAAAAAUAUGUGCAGCUUGCACUGACCAAAAAAAUAGGGGAGG------AAAACUAUAGGA ....(((((((((....)))))((((.-.----------........((....)).......((((.....))))............)))).))))------............ ( -16.60) >DroYak_CAF1 73256 102 + 1 AAAACCUUGAAUUGAAAAAUUCCCAAA-A----------CAAAAAUAUGCCUGCAAAAAUAUGUGCAAAUUGCACUGGCCAGA-AAAUAGGAGACUCAAACAAAAAAUUCAAAA ......(((((((..............-.----------.........(((...........((((.....)))).)))....-....((....)).........))))))).. ( -13.40) >DroPer_CAF1 182222 95 + 1 AAAACCUUGAAUUGAAAAAUUCCAAAA-AAAAGAAACCAAAAAAAUAUGCCUGCAAAAAUAUGUAUCUGUAGAUGUGU---A--AAGGAGGAGU-A------U---CUGUA--- ....(((((((((....))))).....-................((((..(((((............)))))..))))---.--...))))...-.------.---.....--- ( -13.20) >consensus AAAACCUUGAAUUGAAAAAUUCCCAAA_A__________CAAAAAUAUGCCUGCAAAAAUAUGUGCAAGUUGCACUGUCCAA__AAAUAGGAGA_A______UAAACUAUAG_A ....(((.(((((....)))))........................................((((.....)))).............)))....................... ( -5.07 = -7.35 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006