Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,026,006 – 12,026,115 |
Length | 109 |
Max. P | 0.660981 |
Location | 12,026,006 – 12,026,115 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -25.04 |
Consensus MFE | -18.26 |
Energy contribution | -19.86 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.73 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12026006 109 + 22224390 AAAAAUUCCAUGAUUCCAUGAGU-CACAUAUUGUGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC ..........((((((...))))-))....(((.((.....(((((...(((((..(((((((....)))))))..)))))...)))))((......))....))))).. ( -22.90) >DroSec_CAF1 58330 109 + 1 AAAAAUGCAAUGAUUCCAUGAGU-CACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC ......((..((((((...))))-))....(((((..(...(((((...(((((..(((((((....)))))))..)))))...)))))...)..)))))...))..... ( -30.10) >DroSim_CAF1 56934 109 + 1 AAAAAUGCAAUGAUUCCAUGAGU-CACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC ......((..((((((...))))-))....(((((..(...(((((...(((((..(((((((....)))))))..)))))...)))))...)..)))))...))..... ( -30.10) >DroEre_CAF1 54598 91 + 1 AAA-----AAUAGUUCCA--------AAUA------GUUCCGAAUUGUCUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC ...-----..........--------....------.....(((((...(((((..(((((((....)))))))..)))))...)))))..................... ( -17.50) >DroYak_CAF1 57969 105 + 1 AGA-----AAUAGUUCCAUGAGUCCACAUAUUGGGCGAUACGAAUUGACUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUUAGUCCUGUUUACCCAAGAAGCCAAAC ..(-----(((((........(((((.....))))).......(((((.(((((..(((((((....)))))))..))))).))))).))))))................ ( -24.60) >consensus AAAAAU_CAAUGAUUCCAUGAGU_CACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAAGUUCUGUUUACCCAAGAAGCCAAAC ..............................(((((..(...(((((...(((((..(((((((....)))))))..)))))...)))))...)..))))).......... (-18.26 = -19.86 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:58 2006