Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,996,229 – 11,996,386 |
Length | 157 |
Max. P | 0.567346 |
Location | 11,996,229 – 11,996,346 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -22.48 |
Energy contribution | -22.60 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.25 |
Structure conservation index | 0.85 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11996229 117 - 22224390 ACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGCCGGCAUUUUCGACUCCGUUGGUCCCGUUUGCUUUUUGGC .............(((....((((((...--...((((.((((......)))).))))..((((...((((((....)))))).....))))....)))))).......)))....... ( -26.20) >DroSec_CAF1 35179 117 - 1 ACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGCCGGCAUUUUCGACUCCGUUGGUCCCGUUUGCUUUUUGGC .............(((....((((((...--...((((.((((......)))).))))..((((...((((((....)))))).....))))....)))))).......)))....... ( -26.20) >DroSim_CAF1 36246 117 - 1 ACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGCCGGCAUUUUCGACUCCGUUGGUCCCGUUUGCUUUUUGGC .............(((....((((((...--...((((.((((......)))).))))..((((...((((((....)))))).....))))....)))))).......)))....... ( -26.20) >DroEre_CAF1 34104 117 - 1 ACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGCCGGAAUUUUCGACUCCGCUGGUACCGUUUGGUUUUUGGC .((.(((((((.((((.............--...((((.((((......)))).))))..((((.((((((((....))))))))...))))....))))....)))))))....)).. ( -30.20) >DroYak_CAF1 35238 118 - 1 ACAUUUUAAUGGCAGUUUUAACCGACUUUUUUUUGCUGCUAGUGUCACAAUUUUUGGCUCUUGAUUUCCGGCAACACUGCCGGCAUUUUCGACUCCGUUG-UACCCGUUUGUUUUUGGC .........(((((((..................))))))).....(((((....((...((((...((((((....)))))).....))))..))))))-)..(((........))). ( -22.87) >consensus ACAUUUAAAUGACAGCUUUAACCAACUUU__UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGCCGGCAUUUUCGACUCCGUUGGUCCCGUUUGCUUUUUGGC ....................((((((........((((.((((......)))).))))..((((...((((((....)))))).....))))....))))))................. (-22.48 = -22.60 + 0.12)
Location | 11,996,268 – 11,996,386 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -21.45 |
Consensus MFE | -18.35 |
Energy contribution | -19.19 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.13 |
Mean z-score | -1.23 |
Structure conservation index | 0.86 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11996268 118 - 22224390 UAAAUUAAACGAGAAACAAAAAUGCGAGAAUAUUUUGCAUACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGC .........(((((..(((((((((((((...))))))..(((((....((.((((.............--...)))))))))))....)))))))..)))))......(....)..... ( -23.59) >DroSec_CAF1 35218 118 - 1 UAAAUUAAACGAGAAACAAAAAUGCGAGAAUAUUUUGCAUACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGC .........(((((..(((((((((((((...))))))..(((((....((.((((.............--...)))))))))))....)))))))..)))))......(....)..... ( -23.59) >DroSim_CAF1 36285 118 - 1 UAAAUUAAACGAGAAACAAAAAUGCGAGAAUAUUUUGCAUACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGC .........(((((..(((((((((((((...))))))..(((((....((.((((.............--...)))))))))))....)))))))..)))))......(....)..... ( -23.59) >DroEre_CAF1 34143 116 - 1 UAAAUUAUACA--AAACAAAAAUGCGAGAAUAUUUCGCAUACAUUUAAAUGACAGCUUUAACCAACUUU--UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGC ...........--...(((((((((((((...))))))..(((((....((.((((.............--...)))))))))))....))))))).............(....)..... ( -16.59) >DroYak_CAF1 35276 118 - 1 UAAAAUAUACG--AAACAAAAAUGCGAGAAUAUUUGGCAUACAUUUUAAUGGCAGUUUUAACCGACUUUUUUUUGCUGCUAGUGUCACAAUUUUUGGCUCUUGAUUUCCGGCAACACUGC ..........(--((((((....((.((((....((((((.........(((((((..................)))))))))))))....)))).))..))).)))).(....)..... ( -19.87) >consensus UAAAUUAAACGAGAAACAAAAAUGCGAGAAUAUUUUGCAUACAUUUAAAUGACAGCUUUAACCAACUUU__UUCGCUGCAAAUGUCACAAUUUUUGGCUCUCGAUUUCCGGCAACACUGC .........(((((..(((((((((((((...))))))..(((((....((.((((..................)))))))))))....)))))))..)))))......(....)..... (-18.35 = -19.19 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:26 2006