Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,991,236 – 11,991,326 |
Length | 90 |
Max. P | 0.946605 |
Location | 11,991,236 – 11,991,326 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -20.56 |
Energy contribution | -20.76 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.85 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11991236 90 - 22224390 ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU------------CGGAUCGUCCCUUUUA ...(((((....(..((((((......(((((((((((((.....)))))))))).))).))))))..)..)))------------)).............. ( -22.00) >DroSec_CAF1 30502 89 - 1 ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU------------CGGAUCGUCCCU-UUA ...(((((....(..((((((......(((((((((((((.....)))))))))).))).))))))..)..)))------------))..........-... ( -22.00) >DroSim_CAF1 31747 89 - 1 ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU------------CGGAUCGUCCCU-UUA ...(((((....(..((((((......(((((((((((((.....)))))))))).))).))))))..)..)))------------))..........-... ( -22.00) >DroEre_CAF1 29423 101 - 1 ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAUCUGCAUUUGCAUUCGCAUUCGGAUUCGCAUUCGGAUCGUCCGU-UUU ..((((((....(..(((...(((((((((.(((((((((.....)))))))))..)))...(((....)))..)))))).)))..).....))))))-... ( -29.30) >DroYak_CAF1 30605 95 - 1 ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUUCGGAC------UCGGAUCGUCCUU-UUU .....((((..((((((..........(((((((((((((.....)))))))))).)))...(((....)))..)))))------)..))))......-... ( -25.20) >consensus ACACGGAUUUAAGUUUGCAAAAAUCUGGCAUUGUUUUAGUUGUUUGCUAAGGCAGCUGCAUUUGCAUUCGCAUU____________CGGAUCGUCCCU_UUA ...(((((((..(....)..)))))))(((((((((((((.....)))))))))).)))...(((....)))...............((.....))...... (-20.56 = -20.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:16 2006