Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,986,014 – 11,986,108 |
Length | 94 |
Max. P | 0.873742 |
Location | 11,986,014 – 11,986,108 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 85.56 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -21.01 |
Energy contribution | -21.41 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.86 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11986014 94 + 22224390 GCCGUUGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAAGUUGCAAGUUGCCCCAGCUAAAUCCAUUUCAGCCUU-----------------------CUUCUCU ((.(..(((......((((((..(..((((((((.................))))).)))..).)))))).....)))..).))...-----------------------....... ( -21.43) >DroSec_CAF1 25365 94 + 1 GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCUAAAUCCAUUCCAGCCUC-----------------------CUUCUCC ((.((((((......((((((..(..(((((((...................)))).)))..).)))))).....)))))).))...-----------------------....... ( -25.61) >DroSim_CAF1 25972 94 + 1 GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCCAAAUCCAUUCCAGCCUC-----------------------CUUCUCC ((.((((((.......(((((..(..(((((((...................)))).)))..).)))))......)))))).))...-----------------------....... ( -24.03) >DroEre_CAF1 24178 94 + 1 GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCGCCAGCUAAAUCCAUACCAGCCUC-----------------------CACCUCU ...((((((......((((((.((..(((((((...................)))).)))..)))))))).....(......)....-----------------------)))))). ( -25.41) >DroYak_CAF1 25681 116 + 1 GC-GGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCUAAAUCCAUACCAGCCUCCCAUACACCCACACUUUUUCCGCCGCCUCU ((-(((((((.....((((((..(..(((((((...................)))).)))..).))))))......))))).(.....)....................)))).... ( -25.71) >consensus GCCGGGGUGUCCAUAAGCUGGAUGUGACUGCAAUCGCCAACAAUUACAAAACUUGCAAGUUGCCCCAGCUAAAUCCAUUCCAGCCUC_______________________CUUCUCU ((.((..((......((((((..(..(((((((...................)))).)))..).)))))).....))..)).))................................. (-21.01 = -21.41 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:06 2006