Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,937,886 – 11,937,994 |
Length | 108 |
Max. P | 0.859506 |
Location | 11,937,886 – 11,937,994 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.86 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -28.92 |
Energy contribution | -29.92 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.84 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11937886 108 - 22224390 AACUAGGAACAACUUAUGUACGUGGAAAUGCCAGCCCUCGUCGAAUCGGUUGGCUUGGCAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC ..(((.(.(((.....))).).)))....(((((((...........)))))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). ( -33.90) >DroSec_CAF1 21022 104 - 1 AACUAGGAACCACUU----ACGUGGAAAUGCCAGCCCUCGUCGAAUUGGUUGGCUUGACAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACAUCCUGGCGUUGCCC .....((..((((..----..)))).((((((((.....(((.(((.(((((......)))))((((.((.....)))))).....))).)))...)))))))).)). ( -34.30) >DroSim_CAF1 11739 104 - 1 AACUAGGAACCACUU----ACGUGGAAUUGCCAGCCCUCGUCGAAUUGGUUGGCUUGGCAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACAUCCUGGCGUUGCCC .........((((..----..))))....(((((((...........)))))))..((((((..(((.((((....((.((((....)))).))))))))))))))). ( -36.40) >DroEre_CAF1 5548 104 - 1 AACUAGGAACCACUU----ACGUGGAAAUGCCAUCCCUCGUCGACUUGGUUGGCUUGGCAACUGGCCUAGGAAUACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC .........((((..----..))))....((((..((..(....)..)).))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). ( -31.20) >DroYak_CAF1 5230 104 - 1 AACUGGCAGCCACUU----ACGUGGAAAUGCCAUCCCUCGUCGAAUUGGUUGACUUGGCAACUGGCCUAGGUAUACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC ...(((((.((((..----..))))...)))))......(((((.....)))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). ( -36.40) >consensus AACUAGGAACCACUU____ACGUGGAAAUGCCAGCCCUCGUCGAAUUGGUUGGCUUGGCAACUGGCCCAGGAAAACUGGCCAAAACAUUGGACUUUCUGGCGUUGCCC .........((((........))))....(((((((...........)))))))..(((((((((((.((.....))))))).....(..(.....)..).)))))). (-28.92 = -29.92 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:21 2006