Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,918,119 – 11,918,232 |
Length | 113 |
Max. P | 0.635969 |
Location | 11,918,119 – 11,918,232 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -36.12 |
Consensus MFE | -27.40 |
Energy contribution | -28.09 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -1.69 |
Structure conservation index | 0.76 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11918119 113 + 22224390 CUGAGUUUUG-----GUUUUUUGGGCUUCGCUUUGGCUGCUUCAUUUGGCUCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG--CUCCAGCCUGCAGCCG ..((((...(-----(((.....))))..)))).((((((.......((((..((((((((((....)).(((((((((.....)))))))))))))...))--))..)))).)))))). ( -37.10) >DroEre_CAF1 26693 113 + 1 CCGAGUUUUG-----GUUUUUUGGGUCUCGCUUUGGCUGCUUCAUUUGGCCCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG--CUCCAGCCUGCAGCCG .((((.((..-----(....)..)).))))....((((((.......(((...((((((((((....)).(((((((((.....)))))))))))))...))--))...))).)))))). ( -37.40) >DroYak_CAF1 29611 113 + 1 CUGAGUUUUG-----GUUUUUUGGGUUUCGCUUUGGCUGCUUCAUUUGGCUCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG--CCUCAGCCUGCAGCCU ..(((.((..-----(....)..)).))).....((((((.......((((..((((((((((....)).(((((((((.....)))))))))))))...))--))..)))).)))))). ( -38.20) >DroAna_CAF1 51647 117 + 1 CUGAGUUGUGUGUUUUUUUUUCGGGUUUCACUUUGGCUGCUUCAUUUGGCUCUGGAAACAUGCAACAGCA---GCAGUCAACGCGAUUGCUUUAUGUCUAUGUUCUCCAGCCUCCAGCCG (((((..(........)..)))))..........(((((........((((..(((((((((..(((..(---((((((.....)))))))...))).)))))).)))))))..))))). ( -31.80) >consensus CUGAGUUUUG_____GUUUUUUGGGUUUCGCUUUGGCUGCUUCAUUUGGCUCUGGCAACAUGCAACAGCAAGAGCAGUCAACGCGAUUGCUUUAUGUCUAUG__CUCCAGCCUGCAGCCG (((((..............)))))..........((((((.......((((..((...((((..(((...(((((((((.....))))))))).))).))))..))..)))).)))))). (-27.40 = -28.09 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:10 2006