Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,334,947 – 1,335,065 |
Length | 118 |
Max. P | 0.584197 |
Location | 1,334,947 – 1,335,065 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -44.77 |
Consensus MFE | -28.62 |
Energy contribution | -28.32 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.27 |
Mean z-score | -1.46 |
Structure conservation index | 0.64 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1334947 118 - 22224390 AGAUUUAGUCUUUACCUCCUUCUUCUUCUGCUCCAGGCUGACCUGCACGGCGGCGUCGAACUCGCGUCGGUCGCGCACGCGCUGCUCGCUGCGCAGGUGGAAGGGUCUGGAGCGGGUA ..........................(((((((((((((.((((((.((((((((.((....((((.....))))....)).))).))))).)))))).....))))))))))))).. ( -52.70) >DroPse_CAF1 5230 109 - 1 --------CAUUUACCUCUUUUUUCUUCUUCUCCAGGCUGACCUGCACAGCAGCGUCAUAUUCGCGGCGCUCGCGCACGCGCUGAUCGCUGCGCAGCUGGAACGGUCUGGGAUGG-CA --------..................((.((.((((((((.((.((...(((((((((....(((((((....))).)))).))).))))))...)).))..)))))))))).))-.. ( -43.10) >DroEre_CAF1 2088 118 - 1 AGAUUUAGUCUUUACCUCCUUCUUCUUCUGCUCCAGGUUGACCUGCACGGCGGAGUCGAACUCCCGCCGGUCGCGCACGCGUUGCUCGCUGCGCAGAUGAAAGGGUCUGGGGUGGGUG ..........................((..(((((((....(((...((((((((.....)).))))))((((((((.(((.....)))))))).)))...))).)))))))..)).. ( -45.10) >DroYak_CAF1 933 118 - 1 AGAGUUAGUCUUUACCUCCUUCUUCUUCUGCUCCAGGCUGGCCUGCACGGCGGCGUCGAACUCGCGCCGGUCGCGCACGCGCUGCUCGCUGCGCAGAUGGAAUGGUUUGGAUCGGGUG ..(.(..((((..(((...((((...(((((..((((....))))..((((((((.((....))))))(((.(((....))).))).)))).))))).)))).)))..))))..).). ( -44.50) >DroAna_CAF1 865 109 - 1 --------UAUUUACCUCAUUUUUCUUCUGCUCCAAACUCGCCUGCACAGCAGCGUCGUAUUCGCGCCGUUCGCGCAGGCGCUGUUCGCUGCGAAGCUGGAACGGCUUGGGCUG-GCA --------..................((.((.((((....((((((.((((.(((.((....))))).))).).))))))((((((((((....)))..))))))))))))).)-).. ( -40.10) >DroPer_CAF1 5218 109 - 1 --------CAUUUACCUCUUUUUUCUUCUUCUCCAGGCUGACCUGCACAGCAGCGUCAUAUUCGCGGCGCUCGCGCACGCGCUGAUCGCUGCGCAGCUGGAACGGUCUGGGAUGG-CA --------..................((.((.((((((((.((.((...(((((((((....(((((((....))).)))).))).))))))...)).))..)))))))))).))-.. ( -43.10) >consensus ________UAUUUACCUCCUUCUUCUUCUGCUCCAGGCUGACCUGCACAGCAGCGUCGAACUCGCGCCGGUCGCGCACGCGCUGCUCGCUGCGCAGCUGGAACGGUCUGGGAUGGGCA ...........................(((.(((((((((((((((...)))).)))...............(((((.(((.....)))))))).........)))))))).)))... (-28.62 = -28.32 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:51 2006