Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,890,606 – 11,890,714 |
Length | 108 |
Max. P | 0.653004 |
Location | 11,890,606 – 11,890,714 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.75 |
Mean single sequence MFE | -19.92 |
Consensus MFE | -8.79 |
Energy contribution | -9.85 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.18 |
Mean z-score | -2.08 |
Structure conservation index | 0.44 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11890606 108 - 22224390 AAUUGGACCACCU------------UUACCCCCUUCAACCCGUUUACAUUUUGUAAAUUCGUCCAAUUUACGUGUGUGUUUCGGCGUGCAAAAUAAAAUCAUCAGCAGUCAAUUAAUCAA .....(((.....------------............(((((..(((((..((((((((.....)))))))).)))))...))).))((...............)).))).......... ( -15.86) >DroSec_CAF1 1153 102 - 1 AAUUGGAUCACCCGAAGGGGUAAAUUUCAA--------CCCCUUUGCAU--UGCAAAUUCGUCCAAUUGAA--------ACCAAAAAUAAAAAUAAAAUCAUCAGCAGUCAAUUAAUCAA ((((((((((..(((((((((........)--------))))))))...--)).......))))))))...--------......................................... ( -19.01) >DroSim_CAF1 1961 110 - 1 AAUUGGAUCACCCGAAG-GGUAAAUUUCAACCCCUCAACCCCUUUGCAU--UGCAAAUUCGUCCAAUUGAAA-------AUCAAAAAUAAAAAUAAAAUCAUCAGCAGUCAAUUAAUCAA ((((((((.....((.(-(((........)))).))......(((((..--.)))))...))))))))....-------......................................... ( -16.40) >DroYak_CAF1 1955 108 - 1 AAUUGUACCACCCGAACGCGUAAAUUUCAA--------CUCUUUUGCAU--UGUAAAUUGGUUCAAUUUACGUG--UGUUUGGGCGUGCAAAAUGGAAUCAUCAGCAGUCAAUUAAUCAA ..((((((..((((((((((((((((..((--------((..(((((..--.)))))..)))).))))))))).--.))))))).))))))............................. ( -28.40) >consensus AAUUGGACCACCCGAAG_GGUAAAUUUCAA________CCCCUUUGCAU__UGCAAAUUCGUCCAAUUGAAG_______AUCAAAAAGAAAAAUAAAAUCAUCAGCAGUCAAUUAAUCAA ((((((((.((((....)))).....................(((((.....)))))...)))))))).................................................... ( -8.79 = -9.85 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:46 2006