Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,882,417 – 11,882,514 |
Length | 97 |
Max. P | 0.910866 |
Location | 11,882,417 – 11,882,514 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.45 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -21.40 |
Energy contribution | -21.53 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.07 |
Mean z-score | -2.06 |
Structure conservation index | 0.94 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11882417 97 - 22224390 UUAACAAACAAUUGGCAUGUUUUUGACUUUUUGCUGCUCGGCGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU---U .(((((((((((..(((((((.(((((........).)))).)))))))..)))))....)))))).....(((.(((.....))).)))......---. ( -21.50) >DroSec_CAF1 14302 97 - 1 UUAACAAACAAUUGGCAUGUUUUUGGCUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU---U .(((((((((((..(((((((.(((((........)).))).)))))))..)))))....)))))).....(((.(((.....))).)))......---. ( -24.40) >DroSim_CAF1 16741 97 - 1 UUAACAAACAAUUGGCAUGUUUUUGGCUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU---U .(((((((((((..(((((((.(((((........)).))).)))))))..)))))....)))))).....(((.(((.....))).)))......---. ( -24.40) >DroEre_CAF1 15655 100 - 1 UUUACAAACAAUUGGCAUGUUUUUGGUUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAUUAUU ......((((((..(((((((.(((((........)).))).)))))))..))))))..............(((.(((.....))).))).......... ( -21.00) >consensus UUAACAAACAAUUGGCAUGUUUUUGGCUUUUUGCUGCUCGACGACAUGUUUGUUGUUAAUUUGUUGCUAUUGCACGGCUGUCGGCUCUGUUUUUAU___U .(((((((((((..(((((((.(((((........)).))).)))))))..)))))....)))))).....(((.(((.....))).))).......... (-21.40 = -21.53 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:33 2006