Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,876,262 – 11,876,364 |
Length | 102 |
Max. P | 0.660935 |
Location | 11,876,262 – 11,876,364 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -17.13 |
Energy contribution | -17.72 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.30 |
Mean z-score | -1.64 |
Structure conservation index | 0.61 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11876262 102 + 22224390 UCAUCGGGUAGGUGGAAUUCGUUCCAC-GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCCGC--- ....(((((((((((((.........(-(((((...((....))...)--))-)))....((((..((........))..))))......))))))))..))))).--- ( -28.30) >DroSec_CAF1 9444 104 + 1 UCAACGGGUAGGUGGAAUUCGUUCCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCCGCAGC ....(((((((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))..))))).... ( -29.40) >DroSim_CAF1 10590 104 + 1 UCAUCGGGUAGGUGGAAUUCGUUCCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCCGCAGC ....(((((((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))..))))).... ( -29.00) >DroEre_CAF1 11428 99 + 1 UCGUCGGCUAGGUGGAAUCCGUUCCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCACCU----- .....((..((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))))....----- ( -25.70) >DroYak_CAF1 9734 99 + 1 UCGUUGGGUAGGUGGAAUCCGUACCA--GGGGGCUUUGCAUACAUUUU--CC-CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCUAUCUCCAUCU----- ......((.((((((((.......((--(((((...((....))..))--))-)))....((((..((........))..))))......))))))))))....----- ( -25.00) >DroMoj_CAF1 27091 87 + 1 UCUG-----UGCUGUAGCCAGCCCCAUUGGGGACUUUGCAUACAUUUUGCCCACUGGCCUGGCUUGGGCGA-AUAUUUUAGGCUCUCGCACUU---------------- ...(-----(((...((((((((((...)))).))..........((((((((..(((...))))))))))-).......))))...))))..---------------- ( -30.10) >consensus UCAUCGGGUAGGUGGAAUCCGUUCCA__GGGGGCUUUGCAUACAUUUU__CC_CUGACUCAGCCCGGACAACAUAUUUUAGGCUCUCCAUUUCCAUCUCCAUCC_____ .....((((((((((((...(((((....)))))..........................((((..((........))..))))......))))))))..))))..... (-17.13 = -17.72 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:21 2006