Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,873,004 – 11,873,094 |
Length | 90 |
Max. P | 0.577627 |
Location | 11,873,004 – 11,873,094 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 88.96 |
Mean single sequence MFE | -17.07 |
Consensus MFE | -14.88 |
Energy contribution | -14.93 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 0.87 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11873004 90 + 22224390 AUGCCUCGGCUUGCAGUAAUUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC ..((....))..((((((((..............((((((.....(((((((((((....)))))))))))))))))...)))).)))). ( -17.73) >DroSec_CAF1 6222 90 + 1 AUGCCUCGGCUUGCAGCUUAUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC ..((....))..((((..............((..((((((.....(((((((((((....)))))))))))))))))..))....)))). ( -16.57) >DroSim_CAF1 6195 90 + 1 AUGCCUCGGCUUGCAGCUUUUCUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC ..((....))..((((..............((..((((((.....(((((((((((....)))))))))))))))))..))....)))). ( -16.57) >DroEre_CAF1 8059 90 + 1 AUGCCUCGGCUUGCGACGCUCUCCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC ..((.(((.....))).))...........((..((((((.....(((((((((((....)))))))))))))))))..))......... ( -18.70) >DroYak_CAF1 6341 90 + 1 AUGCCUCGGCUUGCAGCGCUUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGUUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC ..((....))..((((..............((..((((((.....(((((((((((....)))))))))))))))))..))....)))). ( -16.57) >DroAna_CAF1 8050 81 + 1 GCAUGUCGACUUGCC---------CUUUUUAAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC (((........))).---------.....((((.((((((.....(((((((((((....)))))))))))))))))...))))...... ( -16.30) >consensus AUGCCUCGGCUUGCAGCGCUUUUCUUACUUUAUUCAAUUUUUCAUUAUUUGCUGACAGCUGUCGGUAAAUGGAAUUGUUUAUUACCUGUC ..((....))....................((..((((((.....(((((((((((....)))))))))))))))))..))......... (-14.88 = -14.93 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:15 2006