Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,845,800 – 11,845,895 |
Length | 95 |
Max. P | 0.657000 |
Location | 11,845,800 – 11,845,895 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.60 |
Mean single sequence MFE | -34.45 |
Consensus MFE | -24.88 |
Energy contribution | -25.38 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.27 |
Mean z-score | -1.52 |
Structure conservation index | 0.72 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11845800 95 + 22224390 AGCGGCGAAUUGGAGGGCGGCAGUGGAUCCUCCGGAUUUGGCGGUCUCCUGGACGCCUUCUUUUUGCCAGCUAGAACAG-AAAUG-UGAAUUAAUUG (((((((((..((((((((.(((..((.((.(((....))).))))..)))..)))))))).)))))).)))...(((.-...))-).......... ( -38.70) >DroSec_CAF1 1750 95 + 1 AGCGGCGAAUUGGAGGGCGGCAGUGGAUCCUCCGGGUUUGGCGGUCUCCUUGUCGUCUUCCUUGUGCCAGCUAGAAGAG-AAAUG-UGGGUUAAUUG (((((((....((((((((((((.(((.((.(((....))).))..)))))))))))))))...)))).))).......-.....-........... ( -36.20) >DroSim_CAF1 1751 95 + 1 AGCAGCGAAUUGGAGGGUGGCAGUUGAUCCUCCGGGUUUGGCGGUCUCCUGGACGCCUUCCGUGUGCCAGCUGGAAGAG-AAAUG-UGGGUUAAUUG (((.(((...(((((((((.(((..((.((.(((....))).))))..)))..)))))))))..)))..))).......-.....-........... ( -30.00) >DroEre_CAF1 1869 95 + 1 AGCGGCGAGUUGGAGGGCGGCAGUGGAUCCUCCGGAUUUGGUGGUCUUCUGGACGCCUUCUUGGUGCCAGCUAGAACAG-AAAUG-UGGGGUAAUUG ...((((....((((((((.(((.(((.((.(((....))).))))).)))..))))))))...)))).(((...(((.-...))-)..)))..... ( -37.40) >DroYak_CAF1 1853 96 + 1 AGCGGCGAGUUGGAGGGCGGCAAUGGAUCCUCCGGAUUUGGCGGUCUCCUGGACGCUUUCCUUGUGCCAGCUAAAAUCGAAAAUA-UGGUGUAAUUG (((((((....((((((((.(...(((.((.(((....))).))..)))..).))))))))...)))).))).............-........... ( -30.20) >DroMoj_CAF1 2206 93 + 1 AGCGGGGAACUGGAGGGCGGCAGGGGUUCCUCAGGGUCUGGUGGAGUUCUCGCUGCAUUUCGUUUGCCUGCC---AUAG-AAAUGAUGAACUAUUUG .(((((.((.(((((.(((((..(..((((((((...)))).))))..)..))))).))))).)).))))).---....-................. ( -34.20) >consensus AGCGGCGAAUUGGAGGGCGGCAGUGGAUCCUCCGGAUUUGGCGGUCUCCUGGACGCCUUCCUUGUGCCAGCUAGAACAG_AAAUG_UGGGUUAAUUG (((((((....((((((((.(((.(((.((.(((....))).))))).)))..))))))))...)))).)))......................... (-24.88 = -25.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:00 2006