Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,840,516 – 11,840,617 |
Length | 101 |
Max. P | 0.762863 |
Location | 11,840,516 – 11,840,617 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 79.31 |
Mean single sequence MFE | -16.33 |
Consensus MFE | -11.94 |
Energy contribution | -12.33 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.10 |
Mean z-score | -1.62 |
Structure conservation index | 0.73 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11840516 101 + 22224390 UCAAUGUAAAUGGUGUGAUAAAAAACGCAAUUAGGCGAUAAUUUCAUGAUAAUUUCAUGAGCGUUAUAAAAUAACACAAGACCAUAAUUGCAGAAAAUUUU ....(((((((((((((........(((......)))((((((((((((.....))))))).))))).......)))...)))))..)))))......... ( -21.20) >DroSec_CAF1 16207 77 + 1 UCAAUGUAAAUGGUGUGAUAAAAAACGCAAUUAGGCGAUAAUUUC-----------AUG-------------AACAUAUGACCGUAAUUGCAGAAGAUAUU ....((((((((((...........(((......))).......(-----------(((-------------....)))))))))..)))))......... ( -10.60) >DroSim_CAF1 16804 88 + 1 UCAAUGUAAAUGGUGUGAUAAAAAACGCAAUUAGGCGAUAAUUUCAUGAAAGUUUCAUG-------------AACAUAUGACCGUAAUUGCAGAAGAUAUU ....(((((((((((((........(((......))).....(((((((.....)))))-------------)))))...)))))..)))))......... ( -17.20) >consensus UCAAUGUAAAUGGUGUGAUAAAAAACGCAAUUAGGCGAUAAUUUCAUGA_A_UUUCAUG_____________AACAUAUGACCGUAAUUGCAGAAGAUAUU ....(((((((((((((........(((......))).......(((((.....)))))...............)))...)))))..)))))......... (-11.94 = -12.33 + 0.39)
Location | 11,840,516 – 11,840,617 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 79.31 |
Mean single sequence MFE | -16.90 |
Consensus MFE | -8.84 |
Energy contribution | -8.95 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.80 |
Structure conservation index | 0.52 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11840516 101 - 22224390 AAAAUUUUCUGCAAUUAUGGUCUUGUGUUAUUUUAUAACGCUCAUGAAAUUAUCAUGAAAUUAUCGCCUAAUUGCGUUUUUUAUCACACCAUUUACAUUGA ..........(((((((.(((...(((((((...)))))))((((((.....)))))).......)))))))))).......................... ( -20.40) >DroSec_CAF1 16207 77 - 1 AAUAUCUUCUGCAAUUACGGUCAUAUGUU-------------CAU-----------GAAAUUAUCGCCUAAUUGCGUUUUUUAUCACACCAUUUACAUUGA ..........(((((((.(((.(((....-------------...-----------.....))).)))))))))).......................... ( -10.60) >DroSim_CAF1 16804 88 - 1 AAUAUCUUCUGCAAUUACGGUCAUAUGUU-------------CAUGAAACUUUCAUGAAAUUAUCGCCUAAUUGCGUUUUUUAUCACACCAUUUACAUUGA ..........(((((((.(((.(((..((-------------(((((.....)))))))..))).)))))))))).......................... ( -19.70) >consensus AAUAUCUUCUGCAAUUACGGUCAUAUGUU_____________CAUGAAA_U_UCAUGAAAUUAUCGCCUAAUUGCGUUUUUUAUCACACCAUUUACAUUGA ..........(((((((.(((.(((....................................))).)))))))))).......................... ( -8.84 = -8.95 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:59 2006