Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,836,106 – 11,836,201 |
Length | 95 |
Max. P | 0.641894 |
Location | 11,836,106 – 11,836,201 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -18.33 |
Consensus MFE | -14.64 |
Energy contribution | -14.20 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.07 |
Structure conservation index | 0.80 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11836106 95 - 22224390 ACCCCAACUGAAAACAACAAAAGCU-----AAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGGCAGCCAACGAACGGCAUCGGGCAUUAUAAUCAUCAACU ..(((................((((-----...(((....)))...)))).(((((..(((........)))..))))).)))................. ( -17.90) >DroSec_CAF1 11902 94 - 1 ACCCCAACUGA-AACAACAAAAGCU-----AAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGUCAGCCAACGAACGGCAUCGGGCAUUAUAAUCAUCAACU ..(((......-.........((((-----...(((....)))...)))).(((((..((((......))))..))))).)))................. ( -18.10) >DroEre_CAF1 13142 94 - 1 ACAACAACUGA-AACAACAG-AGUUGAAGCAAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGGCAGCCAA----CGGCAUCGGGCAUUAUAAUCAUCGACU .......(((.-.....)))-(((((((((...))).....(((...((..((....))..)).(((..----.)))....)))..........)))))) ( -19.00) >consensus ACCCCAACUGA_AACAACAAAAGCU_____AAAGCUAUAUAGCCAAAGCUAAUGCUAAUCGGCAGCCAACGAACGGCAUCGGGCAUUAUAAUCAUCAACU ........(((..........((((.......)))).....(((..(((....)))........(((.......)))....)))..........)))... (-14.64 = -14.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:57 2006