Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,835,261 – 11,835,367 |
Length | 106 |
Max. P | 0.966711 |
Location | 11,835,261 – 11,835,367 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.66 |
Mean single sequence MFE | -25.89 |
Consensus MFE | -22.82 |
Energy contribution | -23.66 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.11 |
Mean z-score | -1.74 |
Structure conservation index | 0.88 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11835261 106 - 22224390 AUACAAAGUCCAUAAUAAUGAUCUUUCAGUUAAUGGGUUGAUUUCAAUUAGAGUUUGGGCAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCCGU .................(((.((((.((((...((((.((.((((................)))))).))))...)))).))))))).....(((....))).... ( -21.39) >DroSec_CAF1 11100 106 - 1 AUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCUGU ...........((((..(((.(((..((((...(((((((.((((................)))))))))))...))))..)))))).....(((....))))))) ( -29.59) >DroSim_CAF1 11569 106 - 1 AUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCUGU ...........((((..(((.(((..((((...(((((((.((((................)))))))))))...))))..)))))).....(((....))))))) ( -29.59) >DroEre_CAF1 12281 101 - 1 UU-----AUCCAUAGUAAUGAUUCUGCAGUUGAUGCGGUGAUUUCAAUUGGAGUUUGGGAAGAGACAUCCAAAUUGCUGUAAGACAUAAAUUGCCUUAUGGCCUGU ..-----.((((.......(((((((((.....))))).)))).....))))(((((((........))))))).((((((((.((.....)).)))))))).... ( -23.70) >DroYak_CAF1 10915 106 - 1 AUACGAAAUCCAUAAUAAUGAUCUUGCAGUUGAUGGGGUGAUUUCAAUUAAAGUUUGGGAAAAGACAUCCAAAUUACUGUAAGACAUAAAUUGCCUUAUGGCCUGU .................(((.(((((((((.....(((((.(..(((.......)))..).....))))).....)))))))))))).....(((....))).... ( -25.20) >consensus AUACAAAAUCCAUAGUAAUGAUCUUGCAGUUAAUGGGGUGAUUUCAAUUAGAGUUUGGGAAGAGACAUCCCAAUUACUGUGAGACAUAAAUUGCCUUAUGGCCUGU .................(((.(((((((((...(((((((.((((((.......)))))).....)))))))...)))))))))))).....(((....))).... (-22.82 = -23.66 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:56 2006