Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,779,795 – 11,779,899 |
Length | 104 |
Max. P | 0.955829 |
Location | 11,779,795 – 11,779,899 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 75.38 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -14.84 |
Energy contribution | -16.36 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.26 |
Mean z-score | -2.00 |
Structure conservation index | 0.63 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955829 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11779795 104 - 22224390 UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU-----ACAAUUUUCAAACACGAUGACAGCAGAGGACUUUUACUUUCAACGAAGGAUUGUAAAUAUGAUU .....((((.....((((((((((((((((((.(((((((-----..........)))).)))..))..)))))))..((......)).)))))))))....))))... ( -26.00) >DroSec_CAF1 9712 104 - 1 UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU-----ACAAUUUUCAAACACGAUGGCAGCAGAGGACUUUUACUUGAAACGAAGGAUUGUAAAUAUUAUU ..............((((((((((((((((((.(((((((-----..........)))).)))..))..)))))))((((....)))).)))))))))........... ( -26.00) >DroSim_CAF1 9832 104 - 1 UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU-----ACAAUUUUCAAACACGAUGGCAGCAGAGGACUUUUACUUGAAACGAAGGAUUGUAAAUAUUAUU ..............((((((((((((((((((.(((((((-----..........)))).)))..))..)))))))((((....)))).)))))))))........... ( -26.00) >DroEre_CAF1 9511 92 - 1 -----------------UCCUUCGUCCUCUGGAGCCUGUUUUCAAACGAUUUUCAAACACAAUGGCAGCUGAGGAAUUUUUCUUUGAGCGAAGGACUAUAAAUAUUAUU -----------------((((((((((((.(..((((((((.............)))))....)))..).)))).............)))))))).............. ( -18.73) >DroYak_CAF1 9714 83 - 1 UCUCAUAUAGCAGCCAGUCCUUCGUUCUCCGGAGUCUGUU-----ACGAUUUUCAAA---------------GGA------CUUUAAACGAAGGACUUUAAAUAUUAGU ...............(((((((((((....(((((((...-----............---------------)))------)))).)))))))))))............ ( -20.56) >consensus UCUGACAUAGAAACCAGUCCUUCGUCCUCUUGAGUCUGUU_____ACAAUUUUCAAACACGAUGGCAGCAGAGGACUUUUACUUUAAACGAAGGAUUGUAAAUAUUAUU ..............((((((((((((((((...(((...........................)))...))))).............)))))))))))........... (-14.84 = -16.36 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:20 2006