Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,775,648 – 11,775,762 |
Length | 114 |
Max. P | 0.969854 |
Location | 11,775,648 – 11,775,762 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.54 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -26.88 |
Energy contribution | -26.76 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -2.49 |
Structure conservation index | 0.77 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11775648 114 + 22224390 UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCUACCGGAAAUCGGUGACAUUGAACGUGACAACAACAAGUGACGUGAUUAUUCAGUCUGAUUGAA--CCCAAGAUUAUCG (((((((((((((((.......((((...(((((((..((((.....)))))))))))...)))).......))))))).(((....)))..)))))))).--............. ( -32.84) >DroSec_CAF1 5607 114 + 1 UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCCACCGGAAGUCGGUGACAUUGAACGUGACAACUACAAGUGACGUGAUUAUUCAGUCUGAUUGAA--CCCAAAAUUAUCG (((((((((((((((..((...((((...(((((((((..(....)..)).)))))))...))))...))..))))))).(((....)))..)))))))).--............. ( -35.40) >DroSim_CAF1 5611 114 + 1 UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCCACCGGAAGUCGGUGACAUUGAACGUGACAACUACAAGUGACGUGAUUAUUCAGUCUGAUUGAA--CCCAAAAUUAUCG (((((((((((((((..((...((((...(((((((((..(....)..)).)))))))...))))...))..))))))).(((....)))..)))))))).--............. ( -35.40) >DroEre_CAF1 5462 113 + 1 UCUAUCAGGUCAUUUCCGGAUCUCACUUCCAAUGGCCGACCGGAAGUCGGUU-CAUUGAACGUGACAACCACAAGUGACGUGAUAAUCCUGUCUGAUGGAA--CCCAAGAUUAUCG ..(((((.(((((((..((...((((...((((((((((.(....))))).)-)))))...))))...))..))))))).))))).(((........))).--............. ( -36.00) >DroYak_CAF1 5542 116 + 1 UGUAUCAGGUCACUUCCGGUUCUCAAUUCCACUGUCCAACCGGAAGUCGGUAACACUGAAAGUGACAACUAGAAGUGACGCGAUAUUCCUGUCAGUUUGAAGAUUGAAGAUUAUCG ........((((((((..(((.(((.((.((.(((...((((.....)))).))).)).)).))).)))..)))))))).(((((.((...((((((....)))))).)).))))) ( -34.70) >consensus UCGAUCAGGUCAUUUCCGGAUCUCACUUCCGAUGUCCCACCGGAAGUCGGUGACAUUGAACGUGACAACUACAAGUGACGUGAUUAUUCAGUCUGAUUGAA__CCCAAGAUUAUCG ..(((((.(((((((..((...((((...((((((..(((((.....)))))))))))...))))...))..))))))).)))))............................... (-26.88 = -26.76 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:17 2006