Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,764,343 – 11,764,456 |
Length | 113 |
Max. P | 0.907134 |
Location | 11,764,343 – 11,764,456 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -20.96 |
Energy contribution | -21.16 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.41 |
Mean z-score | -2.33 |
Structure conservation index | 0.69 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11764343 113 - 22224390 -------GCCAGCAUGGAGAUACCCAUUUCAAACAUUCUGCUGCUCUGCCUGAUCUUUCUGUUGAUCGGCGGAGUGGUGAUGAUCCUGCUGCAGUAUCUCAUCUUCAUCAAGUUCUCGAA -------((.((((.(((((........))...((((..((..(((((((.((((........)))))))))))..)))))).)))))))))............................ ( -35.60) >DroPse_CAF1 26629 113 - 1 -------CCCAACAUGGAGAUACCCAUUUCGAAUAUACUGCUGCUCUGCCUGAUCUUUUUGCUGAUUGGCGGGGUCAUCAUGAUACUGCUGCAGUAUCUGAUAUUCAUAAAAUUCUCCAA -------.......((((((..........(((((.......((((((((.((((........))))))))))))..(((.(((((((...))))))))))))))).......)))))). ( -33.43) >DroGri_CAF1 19837 113 - 1 -------CCCAAAAUGGAGAUACCCAUUUCCAAUGUACUGUUGCUCUGUUUGAUAUUCCUGCUUAUUGGCGGGGUAAUUAUGAUAUUGCUUCAGUAUUUGCUGUUUGUUAAGUUCUCAAA -------..((((.(((((((....)))))))..((((((..((..((((((((..(((((((....)))))))..)))).))))..))..))))))......))))............. ( -27.80) >DroMoj_CAF1 24118 113 - 1 -------CCCAACAUGGAGAUACCCAUUUCGAAUGUGCUGCUGCUCUGCCUAAUAUUCCUGCUAAUCGGCGGAGUUAUUAUGAUACUUCUGCAGUAUUUGCUCUUCAUCAAAUUCUCCAA -------.......((((((..........((..(((((((.((((((((.................))))))))......((....)).)))))))....))..........)))))). ( -27.88) >DroAna_CAF1 28545 120 - 1 CUAGCUAUCCAGCAUGGAGAUACCUAUUUCGAAUAUACUACUGCUGUGCUUGACCUUCCUGCUUAUCGGUGGGGUGCUAAUGAUUCUCCUGCAGUAUUUGCUUUUCAUCAAAUUCUCCAA ...(((....))).((((((..................((((((.(..(((.(((............))).)))..).............))))))((((........)))).)))))). ( -24.84) >DroPer_CAF1 27017 113 - 1 -------CCCAACAUGGAGAUACCCAUUUCGAAUAUACUGCUGCUCUGUCUGAUAUUUUUGCUGAUUGGCGGGGUCAUCAUGAUACUGCUGCAGUAUCUGAUAUUCAUAAAAUUCUCCAA -------.......((((((..........(((((((((((.((..((((((((..(((((((....)))))))..)))).))))..)).)))))).....))))).......)))))). ( -32.73) >consensus _______CCCAACAUGGAGAUACCCAUUUCGAAUAUACUGCUGCUCUGCCUGAUAUUCCUGCUGAUCGGCGGGGUCAUCAUGAUACUGCUGCAGUAUCUGAUAUUCAUCAAAUUCUCCAA ..............((((((..............(((((((.((....(.((((..(((((((....)))))))..)))).).....)).)))))))................)))))). (-20.96 = -21.16 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:08 2006