Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,713,456 – 11,713,549 |
Length | 93 |
Max. P | 0.658852 |
Location | 11,713,456 – 11,713,549 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.94 |
Mean single sequence MFE | -30.87 |
Consensus MFE | -23.19 |
Energy contribution | -24.20 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.35 |
Mean z-score | -1.74 |
Structure conservation index | 0.75 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11713456 93 - 22224390 CCUGCCCAGUUGUGCAAUUUGGCUUCAUCACACUGUUUAGUCUGGCCUUCCCAUUGGCUCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG ...(((.((((....)))).)))(((((((((.((((((((..((((........(((......)))))))..)))))))).))))).)))). ( -32.40) >DroGri_CAF1 6555 91 - 1 --UGCACAGUGGUGCAAUAUGGUUUCAUAACGUUAUUUAGCUUGGCAUUUCCACUGGCGCCGCUGCUGGGGCUGAUUAAUAAUGUUAUGGAAG --(((((....)))))......(((((((((((((((((((((((.....)))(..(((....)))..)))))))...)))))))))))))). ( -30.80) >DroSim_CAF1 5688 93 - 1 CCUGCGCAGUUGUGCAAUUCGGCUUCAUCACACUGUUUAGUCUGGCGUUUCCAUUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG ..(((((....)))))......((((((((((.((((((((..((((((......))))))((.....))...)))))))).))))).))))) ( -35.00) >DroEre_CAF1 5673 93 - 1 CUUGGGCAGUUGUGCAAUUCGGCUUCAUCACACUGUUUAGUUUGGCCUUCCCGUUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUCGAGG .(((.((....)).))).....((((((((((.((((((((..((((........((((....))))))))..)))))))).)))))).)))) ( -31.90) >DroYak_CAF1 5767 93 - 1 CUGCUGCAGUUGUGCAAUUCGGUUUCAUCACACUGUUCAGUUUGGCCUUCCCACUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG (((.((((....))))...))).(((((((((.((((((((..((((....((.((....)).))..))))..)))))))).))))).)))). ( -32.80) >DroAna_CAF1 9488 93 - 1 CUCCUUCAGUUGUGCAGUUCGGGUUCAUCACACUGUUCAGCUUGGCCUUUCCCUUGGCCCCGCUUCUGGCCCUGCUUAAUAAUGUGAUCGAAG .......................(((((((((.((((.(((..((((........(((...)))...))))..))).)))).)))))).))). ( -22.30) >consensus CUUGCGCAGUUGUGCAAUUCGGCUUCAUCACACUGUUUAGUUUGGCCUUCCCAUUGGCGCCGCUGCUGGCCCUGCUGAACAAUGUGAUUGAGG ..(((((....)))))......((((((((((.((((((((..((((....((.((....)).))..))))..)))))))).)))))).)))) (-23.19 = -24.20 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:54 2006