Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,687,103 – 11,687,223 |
Length | 120 |
Max. P | 0.553715 |
Location | 11,687,103 – 11,687,223 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.78 |
Mean single sequence MFE | -52.02 |
Consensus MFE | -24.22 |
Energy contribution | -23.50 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.50 |
Mean z-score | -1.74 |
Structure conservation index | 0.47 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11687103 120 + 22224390 CUCCAUUCAUCUGGACGACUGGGCUGGUACAUCUGUAGCCAUAUGGAGGCGUCGACGCCCUGGCGGGUAGCAAAGGCGGCUGGAAAGCCAGGACGCAGCGUGGUGGUGAGCACCAGUGGC .((((......))))(.((((((((..(((....)))(((((...(..(((((...(((...((.....))...)))((((....))))..)))))..)...))))).))).))))).). ( -47.90) >DroPse_CAF1 305 120 + 1 GUCCACUCGCCUGGCUUGGCCGGCUGGAACACCUGCAGCCACAACGAGGCAUCUACGCCCUGCCUUGUGGCAAAGGCGGCCGGAAAGCCGGCACGCAGCGACGUUGUAAAGAGUGGCGGC (.(((((((((.(((((..(((((((.....(((...(((((((.(.(((......)))...).)))))))..)))))))))).))))))))..(((((...)))))...)))))))... ( -58.50) >DroGri_CAF1 311 120 + 1 CCCCACUCGUCCGGUCGUGCCGGCUGAAAUUGUUGCAGCCAGAUCGAUGCAUCCACACCCUGACGUGUCGCAAAUGCCGCCGGAUAGCCGGCGCGCAACGUGGUCGCAAACAACGGAGGC ((((..(((.((((.....)))).)))..(((((((.((((...((((((.((........)).))))))....(((((((((....)))))).)))...)))).)).))))).)).)). ( -44.90) >DroWil_CAF1 10611 120 + 1 CGCCACUCAUCCGGCUUAGAUGGCUGAUACAUUUGCAGCCACAUGGAGGCAUCUACACCCUGGCGAGUGGCAAAUGCUGCUGGAUAUCCAGGACGCAAUGAUGUACUAAAUAAUGGUGGC .(((((.(((.(((((.....))))).(((((((((.(((.......)))........((((((.((..((....))..)).)....)))))..)))..)))))).......)))))))) ( -42.20) >DroAna_CAF1 305 120 + 1 UUCCACUCGUCUGGGCGACUCGGCUGGUACAUCUGCAGCCAGACGGAGGCGUCCACGCCCUGGCGAGUGGCAAACGCCGGCGGAAAGCCGGCACGCAGCGUCGUGUUGAACAGCAGGGGC ..(((((((((.(((((....(((((.........))))).((((....))))..))))).))))))))).....((((((.....)))))).....((.((.((((....)))).)))) ( -59.30) >DroPer_CAF1 305 120 + 1 GUCCACUCGGUCGGCUUGGCCGGCUGGAACACCUGCAGCCACAACGAGGCAUCUACGCCCUGCCUUGUGGCAAAGGCGGCCGGAAAGCCGGCACGCAGCGACGUUGUAAAGAGUGGCGGC (.((((((.((((((((..(((((((.....(((...(((((((.(.(((......)))...).)))))))..)))))))))).))))))))..(((((...)))))...)))))))... ( -59.30) >consensus CUCCACUCGUCCGGCCGAGCCGGCUGGAACAUCUGCAGCCACAUCGAGGCAUCUACGCCCUGGCGUGUGGCAAAGGCGGCCGGAAAGCCGGCACGCAGCGACGUGGUAAACAGCGGCGGC ..((..(((.(((((...))))).)))(((..((((.(((((.....(((......))).......))))).......(((((....)))))..))))....)))............)). (-24.22 = -23.50 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:47 2006