Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,654,812 – 11,654,905 |
Length | 93 |
Max. P | 0.997768 |
Location | 11,654,812 – 11,654,905 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.11 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -23.46 |
Energy contribution | -23.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.85 |
SVM decision value | 2.93 |
SVM RNA-class probability | 0.997768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11654812 93 - 22224390 CCCCCACAGAAUCGGGAGAG--UGCAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACA------AAAACAAUAA- ..(((........)))...(--(((.((((((((((........))))))))))....((((...)).)).))))..........------..........- ( -24.90) >DroSec_CAF1 28056 99 - 1 CCCCCACAGAAUCGGGAGAG--UGGAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAACAACAAAAACAAUAA- ...((((....((....)))--))).((((((((((........))))))))))...(((..(((((....)).)))..)))...................- ( -24.90) >DroSim_CAF1 24555 100 - 1 CCCCCACAGAAUCGGGAGAG--UGGAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAACAACAAAAACAAUAAU ...((((....((....)))--))).((((((((((........))))))))))...(((..(((((....)).)))..))).................... ( -24.90) >DroEre_CAF1 30226 99 - 1 AGCCCACGGAAUCGGGGGAG--UGGGAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAAAAACAAAAACAAUAA- ..(((.((....)))))..(--((.(((((((((((........))))))))))).....((.((.....)).))..))).....................- ( -30.30) >DroYak_CAF1 27517 101 - 1 CCCCCACAGAAUCGGGAGAGUGUGGGAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACACAAACAAAAACAAUAA- ...(((((...((....)).)))))(((((((((((........)))))))))))..(((..(((((....)).)))..)))...................- ( -32.50) >consensus CCCCCACAGAAUCGGGAGAG__UGGAAGGAGUGCAGCUGCAUCACUGCAUUCCUCAAUUGGCUUGGCACACGCGCAACACAAACAAAAACAAAAACAAUAA_ ..(((........)))..........((((((((((........))))))))))...(((..(((((....)).)))..))).................... (-23.46 = -23.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:38 2006