Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,635,980 – 11,636,073 |
Length | 93 |
Max. P | 0.766176 |
Location | 11,635,980 – 11,636,073 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -20.56 |
Energy contribution | -20.56 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.21 |
Structure conservation index | 0.93 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11635980 93 + 22224390 UACAUAUCCGUAGGCU------AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAAAAA ..((.(((.(((((..------..))))).))).))(((((((((((.....)))))).....))))).....(((((((((....))))))))).... ( -22.40) >DroSec_CAF1 9264 92 + 1 UACAUAUCCGUAGGCU------AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAA-AA ..((.(((.(((((..------..))))).))).))(((((((((((.....)))))).....))))).....(((((((((....))))))))).-.. ( -22.40) >DroSim_CAF1 8587 92 + 1 UACAUAUCCGUAGGCU------AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAA-AA ..((.(((.(((((..------..))))).))).))(((((((((((.....)))))).....))))).....(((((((((....))))))))).-.. ( -22.40) >DroEre_CAF1 9744 98 + 1 UACAUAUCCGUAGGCUAAUGCUAACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAGUUAUGUGUAUACAUAUAUAAAA-AA ..((.(((.(((((.((....)).))))).))).))(((((((((((.....)))))).....))))).......((((((....)))))).....-.. ( -21.20) >DroYak_CAF1 8592 98 + 1 UACAUAUCCGUAGGCUAACGCUAACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAGUUAUGUGUAUAGAUAUAUAAAA-AA ...(((((..(((((....))).............((((((((((((.....)))))).....))))))((((....))))))..)))))......-.. ( -22.20) >consensus UACAUAUCCGUAGGCU______AACCUAUUGAUUUGCGACUCCUCGGGGAUUUCGGGGCUUACAGUCGUCACAUUUAUGUGUAUACAUAUAUAAAA_AA ..((.(((.(((((..........))))).))).))(((((((((((.....)))))).....)))))......((((((((....))))))))..... (-20.56 = -20.56 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:24 2006