Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,620,498 – 11,620,589 |
Length | 91 |
Max. P | 0.637627 |
Location | 11,620,498 – 11,620,589 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -21.55 |
Energy contribution | -23.30 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.68 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11620498 91 - 22224390 --CAGGUGGGGCAACUGAAAACUGAAAUCUUUGCAGCCGGAAUCGGAAUCCACAGGUGAG------CUUGAGCUG------------GAGCUUGAGCUACAGGUGACAGUC --...(((((((((..((.........)).))))..(((....)))..)))))..((.((------((..(((..------------..)))..)))))).(....).... ( -26.90) >DroSec_CAF1 51206 103 - 1 --CAGGUGGGGCAACUGAAAACUGAAGUCUCUGCAGCCGGAAUCGGAAUCCACAGGUGAG------CUUGAGCUGGAGCUGAAGCUGGAGCUUGAGCUACAGGUGACAGUC --(((.(.((....)).)...)))..(((((((.(((.(((.......))).(((((.((------(((.(((....))).)))))...))))).))).)))).))).... ( -35.70) >DroEre_CAF1 51659 90 - 1 --CAGGUGGGGCAACUG-A------AAUCUGUGCAGCCGGAAUCGGAAUCCACAGGUGAGCCUGAGCUUGAGCUU------------GAGCUUGAGCUACAGGUGACAGCC --.......(((.....-.------.(((((((...(((....)))....)))))))..(((((((((..(((..------------..)))..)))).)))))....))) ( -36.80) >DroYak_CAF1 53032 87 - 1 AACAGGUGGGGCAACUCAA------AAUCUGUGCAGCCGGAAUCGGAAUCCACAGGUGAG------CUUCAGCUU------------AAGCUUGAGCUACAGGUGACAGUC ......((((....)))).------.(((((((...(((....)))....))))))).((------(((.(((..------------..))).)))))...(....).... ( -28.20) >consensus __CAGGUGGGGCAACUGAA______AAUCUGUGCAGCCGGAAUCGGAAUCCACAGGUGAG______CUUGAGCUG____________GAGCUUGAGCUACAGGUGACAGUC .....(((((....)...........(((((((...(((....)))....))))))).........((..(((((((((....)))))))))..)))))).(....).... (-21.55 = -23.30 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:08 2006