Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,585,656 – 11,585,751 |
Length | 95 |
Max. P | 0.664814 |
Location | 11,585,656 – 11,585,751 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 73.40 |
Mean single sequence MFE | -24.65 |
Consensus MFE | -17.74 |
Energy contribution | -17.08 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.19 |
Mean z-score | -1.19 |
Structure conservation index | 0.72 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11585656 95 - 22224390 CAUCGCCCGUUUCAAAGACAUCCAUCGGCACACUUUGUCCGCCCGCUGCCUCACCA--CCUCCUUGGCCAUAAGACA----UACCUGGUCGGGAGGUGGAC ....((..(((.....)))......(((.((.....)))))...)).......(((--((((((.(((((.......----....)))))))))))))).. ( -28.20) >DroSec_CAF1 17524 99 - 1 CAUUGCCCGUUUCAAAGACAUCCAUCGGCACACUUUGUCCGCCCGCUGCUUCACCU--CCUCCUUGGCCACCAGACAUACAUACCUGGUCGGGAGGCGGAC ...((((...................))))......((((((((.........((.--.......))(((((((..........))))).))).))))))) ( -24.71) >DroEre_CAF1 17351 76 - 1 --------------------UCCAUCGGCACACUUUGUCCGCCCGCUGCCCCACCAACCCCCCCUUACC-CCAGACU----CACCUGGUCGGGAGGCGGAC --------------------.....(((.((.....))))).(((((.(((.((((.......((....-..))...----....)))).))).))))).. ( -21.04) >consensus CAU_GCCCGUUUCAAAGACAUCCAUCGGCACACUUUGUCCGCCCGCUGCCUCACCA__CCUCCUUGGCCACCAGACA____UACCUGGUCGGGAGGCGGAC .........................(((.((.....))))).(((((.(((.(((...............................))).))).))))).. (-17.74 = -17.08 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:59 2006