Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,553,559 – 11,553,679 |
Length | 120 |
Max. P | 0.826904 |
Location | 11,553,559 – 11,553,679 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -28.64 |
Energy contribution | -28.53 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.11 |
Mean z-score | -1.92 |
Structure conservation index | 0.95 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11553559 120 - 22224390 CUUUGAGUAGCACACGUGUGUACUCGAUUAUGGAACCAGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAACGCUGGAAUAGUUUUGUAAUAUUUUAGAUAUUUAUACAUGUAUAGCUACCA ...((.(((((..(((((((((.((.((((..((((...((((.((((....(((....)))....)))))))).....))))..))))......))....)))))))))...))))))) ( -29.10) >DroSec_CAF1 19797 120 - 1 CUUUGAGUAGCACACGUGUGUACUCGAUUAUGGAACCAGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAAAGCUGGAACAGUUUUGUAAUAUUUUCGAUAUUUAUACAUGUAUAGCUACUU ....(((((((..(((((((((.((((..(((....(((.(((((((((.(....(((....)))......).))))))))))))...)))..))))....)))))))))...))))))) ( -35.00) >DroSim_CAF1 20430 120 - 1 CUUUGAGUAGCACACGUGUAUACUCGAUUAUGGAACCGGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAAAGCUGGAACAGUUUUGUAAUAUUUUUGAUAUUUAUAAAUGUAUAGCUACUU ....((((((((((..((((...((((..(((....(((.(((((((((.(....(((....)))......).))))))))))))...)))..))))....))))..)))...))))))) ( -26.40) >consensus CUUUGAGUAGCACACGUGUGUACUCGAUUAUGGAACCAGCAGCUGUUCUCGAAUUAGUUAAUGCUUGAAAGCUGGAACAGUUUUGUAAUAUUUUAGAUAUUUAUACAUGUAUAGCUACUU ......(((((..(((((((((.((((..(((....(((.(((((((((.(....(((....)))......).))))))))))))...)))..))))....)))))))))...))))).. (-28.64 = -28.53 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:47 2006