Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,552,709 – 11,552,802 |
Length | 93 |
Max. P | 0.926261 |
Location | 11,552,709 – 11,552,802 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 98.57 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -32.25 |
Energy contribution | -32.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.03 |
Structure conservation index | 1.01 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11552709 93 - 22224390 UACAUUCGGGCACCGAGUGCGGGCGAGAUAGAACGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC ......((((...((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).))))))...))))..... ( -27.80) >DroSec_CAF1 18922 93 - 1 UACAUUCGGGCAGCGAGUGCGGGCGAGAUAGAGCGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC ......((((.((((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).)))))))).))))..... ( -34.20) >DroSim_CAF1 19555 93 - 1 UACAUUCGGGCAGCGAGUGCGGGCGAGAUAGAGCGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC ......((((.((((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).)))))))).))))..... ( -34.20) >consensus UACAUUCGGGCAGCGAGUGCGGGCGAGAUAGAGCGACAACUCCUGUUCCCGGUUCGUCGUCGUUCGUCAUUCCCAUAUUCGCUUCUCGUAUUC ......((((.((((((((.(((...(((.(((((((.((.((.......))...)).))))))))))...))).)))))))).))))..... (-32.25 = -32.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:44 2006