Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,535,553 – 11,535,672 |
Length | 119 |
Max. P | 0.731840 |
Location | 11,535,553 – 11,535,672 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -17.34 |
Energy contribution | -19.22 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.07 |
Mean z-score | -2.16 |
Structure conservation index | 0.68 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11535553 119 - 22224390 AAAAUUAGCUGUUAACAUAAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUGCUUCUAUAAUUUAAGUGAGCCAAAA-AAAGGUGU .(((((((((.........))).....((((((((((((..((((...((((((((.....))))))))...))))))))))))))))....))))))......(((....-...))).. ( -28.70) >DroSec_CAF1 1354 120 - 1 AAAACUAGCUGUUAACAUGAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACCUCUAUAAUUUACGUGAGCCAAAAAAAAGGUGU .......(((.........)))......(((((((((((..((((...((((((((.....))))))))...))))))))))))))).................(((........))).. ( -25.80) >DroSim_CAF1 1395 119 - 1 AAAACUAGCUGUUAACAUGAGCAAUUUAGUAAUUUGAGCAGACAACUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACUUCUAUAAUUUACGUGAGCCAAAA-AAAGGUGU ...............((((...((((.((((((((((((..((((...((((((((.....))))))))...)))))))))))))))).....))))..)))).(((....-...))).. ( -26.60) >DroEre_CAF1 1511 117 - 1 AACACUAGCCAUUAACAUAAGCAGUUU-GUAAUUCGAGCAGACAAUUCGCAUUACAAUAAACAUUAUACUUCUUGUGCUUAAAUUACGUCUUUGAAUUACGUGAGCCAAAG--GAGAUGU ...........((((((((((.(((((-(((((.((((.......)))).)))))))..........))).)))))).))))...((((((((......(....).....)--))))))) ( -21.80) >DroYak_CAF1 1348 118 - 1 AACACUUGUUAUUACCAUAAGCAAUUUGGUAAUUCGAGCAGAAAAUUCGUAUUACAAUAUAUCUGAUACUUUUCGUGCUUAAAUUACUUCUUCGAAUUACUCGAGCCAAAA--AAGGUGU .((((((....................(((((((..(((((((((...((((((.........))))))))))).))))..)))))))..(((((.....)))))......--.)))))) ( -24.50) >consensus AAAACUAGCUGUUAACAUAAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACUUCUAUAAUUUACGUGAGCCAAAA_AAAGGUGU .......(((.........)))......((((((((((((..(((...((((((((.....))))))))...))))))))))))))).................(((........))).. (-17.34 = -19.22 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:41 2006