Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,466,066 – 11,466,173 |
Length | 107 |
Max. P | 0.507665 |
Location | 11,466,066 – 11,466,173 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 71.99 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -11.59 |
Energy contribution | -12.65 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.20 |
Mean z-score | -2.00 |
Structure conservation index | 0.45 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11466066 107 - 22224390 -UAAAAUGCUUGAAAUUCGAUGGAGCUACUAUAAUGCGUCCAUAUGGAGUAAU-UUACUUGGCGCACAAGAAUC-UUAUGGAUUAUUUCGCAAGAUUUUCUUA-------AUGAAAA -......((((.(.......).))))........((((.(((..((((....)-)))..)))))))..((((((-((.((((....)))).))))))))....-------....... ( -21.60) >DroSec_CAF1 11344 96 - 1 -------------AAUUCGAUGGAGCUACUCUAAUGCGUCCAUAUGGAGUAAUUUUACUGGGCACGCAAGAAUC-UUAUGGAUUAUUUCGCAAGAUUUUCUUU-------GUGAAAA -------------((((((.(((((...))))).(((((((....(((....))).....)).)))))......-...)))))).(((((((((......)))-------)))))). ( -21.90) >DroEre_CAF1 11161 105 - 1 GUAA-AAGCAAAAGCUACAAUGCUGC-----UAAUGCGGCCAUAUGGAGUAAU-UUACUGGGCAUCCAGGAAUU-UUGUGGAUUGUUUCGCAAGAUUUUCUUUUAUAAACAAG---- ((((-(((.....(((.(((((((((-----....)))).))).)).)))...-...((((....))))(((((-(((((((....)))))))))))).))))))).......---- ( -27.80) >DroYak_CAF1 11275 111 - 1 AUAAAAAGGAAAAUCUCCAAUGGUGC-----UAAUGCGUCCAUAUGGAGUCAU-UUACUGGGCACCCAAGAAUUUUUGUGGAUUAUUUCGCAAGAUUUUCUUGUACAAAAAUGAAAA ..............((((((((((((-----....))).)))).)))))((((-((...((....))(((((.(((((((((....)))))))))..)))))......))))))... ( -31.40) >consensus _UAA_AAGCAAAAAAUUCAAUGGAGC_____UAAUGCGUCCAUAUGGAGUAAU_UUACUGGGCACCCAAGAAUC_UUAUGGAUUAUUUCGCAAGAUUUUCUUU_______AUGAAAA .............(((((((((((((.........)).))))).)))))).................(((((...(((((((....)))))))....)))))............... (-11.59 = -12.65 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:09 2006