Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,439,713 – 11,439,821 |
Length | 108 |
Max. P | 0.594661 |
Location | 11,439,713 – 11,439,821 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.75 |
Mean single sequence MFE | -26.53 |
Consensus MFE | -19.66 |
Energy contribution | -20.10 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.53 |
Structure conservation index | 0.74 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11439713 108 + 22224390 GGCUGGAAAUCUUAUCUGAAUUCCCUCGCUACAAACAUUCAAGUGG------------CCAAAAUACUCUGCUUGGGUUUUCCGAGCGUUGAUUCAAUAAUCUAGCCAUGAUAUAACAAC (((((((....((((.((((((..(..(((((..........))))------------)...........((((((.....)))))))..)))))))))))))))))............. ( -29.50) >DroSec_CAF1 9423 108 + 1 GGCUGGCAAUCUUAUCUGAAUUCCCUCGCUCCAAACAUUCAAGUGG------------CCAAAAUACUCUGUUUGGGUUUCCCGAGCGUUGAUUCAAUAAUCUAGCCAUGAUAUAACAAC ((((((.....((((.((((((....(((((((((((....((((.------------......)))).))))))((....)))))))..)))))))))).))))))............. ( -26.70) >DroEre_CAF1 7273 120 + 1 GGUUGGCAAUCUUAUCUAAAUUCACUUGCUCCAAACAUUCAAGUGGAAAACAGGAGGGCAAAAAUAUUCUGUUUGGGUUCCUCGAGCGUUUAUUCAAUAAUCUAGCCAUGAUAUAAGAAC ((((((..............((((((((...........))))))))......((((((..((((.....))))..).)))))..................))))))............. ( -21.60) >DroYak_CAF1 5992 120 + 1 GGUUGGCAAUCUUAUCUAAAUUCACUCGCUCCAAACAUUCAAGUGGCCAAAAGGAGGGCCAAAUUACUCUGUUUGAGUUUCUGGAGCGUUUAUUCAAUAAUCUAGCCAUGAUAUAAGAAC ((((((.....((((...(((.....(((((((..........(((((........)))))....((((.....))))...)))))))...)))..)))).))))))............. ( -28.30) >consensus GGCUGGCAAUCUUAUCUAAAUUCACUCGCUCCAAACAUUCAAGUGG____________CCAAAAUACUCUGUUUGGGUUUCCCGAGCGUUGAUUCAAUAAUCUAGCCAUGAUAUAACAAC ((((((.....((((.((((((....(((((.....(((((((..(......................)..))))))).....)))))..)))))))))).))))))............. (-19.66 = -20.10 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:41 2006