Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,415,987 – 11,416,077 |
Length | 90 |
Max. P | 0.885030 |
Location | 11,415,987 – 11,416,077 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -21.51 |
Consensus MFE | -14.36 |
Energy contribution | -13.68 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.20 |
Mean z-score | -1.75 |
Structure conservation index | 0.67 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.885030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11415987 90 + 22224390 AUCCAGGGUAGGUGGUUCUCCAAACAC---------------AUACAGACACACGCAUAUA-UAUCAGCCAGCAACUGACUGAAGUACAACUCCAUUUCAUCCUCC-- ....(((((((((((.(((........---------------....)))..........((-(.((((.(((...))).)))).))).....)))))).)))))..-- ( -13.80) >DroSec_CAF1 61 86 + 1 AUCCAGGGUGGGUGGUUCUCCAAACAC---------------ACAC----ACAUAUGUGUA-UAUCAGCCAGCGACUGACUGGAGGACAACUCCAUUUCAUCCUCA-- ....((((((((..((((((((...((---------------(((.----.....))))).-..((((.......)))).))))))))....))....))))))..-- ( -25.40) >DroSim_CAF1 199 86 + 1 AUCCAGGGUGGGUGGUUCUCCAAACAC---------------ACAC----ACAUAUGUGUA-UAUCAGCCAGCGACUGACUGGAGGACAACUCCAUUUCAUCCUCA-- ....((((((((..((((((((...((---------------(((.----.....))))).-..((((.......)))).))))))))....))....))))))..-- ( -25.40) >DroEre_CAF1 61 92 + 1 AUCCAGGGUGGGUGGUUAUCCAAACCCGUC------------AUAC----AUACGCACACAUUAUCAGCCAGAACCUGACUGGAGUACACCUCCACUUCAUCCUCCAC ....(((((((((((.........((.(((------------(...----....((...........)).......)))).)).........)))).))))))).... ( -19.61) >DroYak_CAF1 61 103 + 1 AUCCAGGGUGGGUGAUUGUCCAAACCCGUCAGGCAGUUACACAUAC----AAACACACACA-UAUUAGACAGAACCUGACUGGAGUACACCUUCACUUCAUCCUCCAC ....(((((((((((..((.....((.((((((..(((........----...........-.....)))....)))))).)).....))..)))).))))))).... ( -23.36) >consensus AUCCAGGGUGGGUGGUUCUCCAAACAC_______________AUAC____ACACACAUAUA_UAUCAGCCAGCAACUGACUGGAGUACAACUCCAUUUCAUCCUCC__ ....(((((((((((.................................................((((.(((...))).))))((.....)))))).))))))).... (-14.36 = -13.68 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:35 2006