Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,402,891 – 11,403,011 |
Length | 120 |
Max. P | 0.764427 |
Location | 11,402,891 – 11,403,011 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -25.97 |
Energy contribution | -27.21 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.82 |
Structure conservation index | 0.81 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11402891 120 + 22224390 AAAAUCGGUGGCGCAUUAGACGAGUUCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACACACAAUGUGAAUGAUGCUCAUCGAAAUUCACAAAAGUGGUAGAGGCACAUACAUAC ...((((((((((((((................)))).))))))))))...((.....(((((.(((..((((((((((....)))...)))))))...)))))))).)).......... ( -34.09) >DroSec_CAF1 4236 120 + 1 AAAAUCGGUGGCGCAUUAGACGAGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACACACAAUGUGAAUGAUGCUCAUAGAAAUUCACAAAAGUGGUAGAGGCACAUAUGUAC ...((((((((((((((................)))).))))))))))...((.....(((((.(((..(((((((.............)))))))...)))))))).)).......... ( -33.31) >DroEre_CAF1 2729 120 + 1 AAAAUCGGCGGCGCAUUAGUCAAGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACAGGCAAUGUGGAUGAUGCUCAUCGAAAUUCAAAAAAGUGGUAGAGGCACGUACAUAC .......(((((......((((.((......))..))))(((((((((((.(((...(((((((.....)))))))..)))))))))............)))))....)).)))...... ( -29.80) >DroYak_CAF1 1649 120 + 1 AAAAUCGGCGGCGCAUUAGUCAGGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACAGACAAUUUUGAUGAUGCUCAUCGAAAUUCACAAAGGUGGUAGAGGUCCAUACAUAC .........(((......))).((.((......(....)((((((.((((.......(((....))).(((((((((.....)))))))))))))...))))))...)).))........ ( -30.50) >consensus AAAAUCGGCGGCGCAUUAGACAAGUCCAAAAACGAUGACGCCACCGGUGACGCAAUAGUUUACACACAAUGUGAAUGAUGCUCAUCGAAAUUCACAAAAGUGGUAGAGGCACAUACAUAC ....(((((((((((((................)))).)))))))(((((.(((...(((((((.....)))))))..))))))))))...((((....))))................. (-25.97 = -27.21 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:20 2006