Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,389,500 – 11,389,602 |
Length | 102 |
Max. P | 0.605872 |
Location | 11,389,500 – 11,389,602 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -13.62 |
Energy contribution | -13.18 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.13 |
Mean z-score | -1.55 |
Structure conservation index | 0.67 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11389500 102 + 22224390 AUAACAAGAGGCUUGUCUCUCCCCAUCCUCCGCCUCCAGGGGCCCCAUCCUCUGUGGCUCCAUCCCUCCAUA--UCACCAUCCAACGUUGCAGCAUACUGGAUG .......(((((...................)))))..((((((.((.....)).))))))...........--....((((((..((........)))))))) ( -23.61) >DroSec_CAF1 43015 100 + 1 AUAACAAGAGGCUUGUC--UCCCCGUCCUCCGCCUCCAGGGACCCCAUCCUCUGUGCCUCCAUCCCUCCAUU--CCACCAUCCUCCUUCCCAGCACUGUGGAUG .......((((....))--))...(((((.........)))))..(((((.(.((((...............--..................)))).).))))) ( -17.81) >DroYak_CAF1 48360 95 + 1 AUAACAAGAGGCUUGUC--UCCUCAUCCUCCGCCUCCAGGGAUCCCAUCCCAU-------CCUCCCUUCAUCUCCCACCAUUCUCGUGCCCAGCACUGUGGAUG .......((((......--.))))....(((((.....(((((...)))))..-------.........................((((...)))).))))).. ( -19.60) >consensus AUAACAAGAGGCUUGUC__UCCCCAUCCUCCGCCUCCAGGGACCCCAUCCUCUGUG_CUCCAUCCCUCCAUA__CCACCAUCCUCCUUCCCAGCACUGUGGAUG .......(((((...................))))).(((((....................)))))...........(((((................))))) (-13.62 = -13.18 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:05 2006