Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,261,590 – 1,261,689 |
Length | 99 |
Max. P | 0.724782 |
Location | 1,261,590 – 1,261,689 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.55 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -12.72 |
Energy contribution | -11.73 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.28 |
Mean z-score | -1.73 |
Structure conservation index | 0.51 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1261590 99 - 22224390 UUAACACUUUAAGUUGGCUUAAAUUUUCGGGAU-AUUUUCACCUAAAUUUUUGAAUAAAU--GCUCAAAAAGGUGGAUCCAACUUGCAAUUUAAGGCC------------------UGGA ...............((((((((((..((((..-...(((((((....((((((......--..))))))))))))).....)))).))))))).)))------------------.... ( -20.70) >DroSec_CAF1 15770 98 - 1 UUAACACUUUAAGUUGGCUUUAAUUGUCUGGAU-ACUUUUUCCUACAUUUUUGAAUAAAU--ACUCAGAAA-GUGGAACCAACUUGCAGUUUAAGGCU------------------UGAA ((((.(((.((((((((.((((..(((..(((.-......))).)))(((((((......--..)))))))-.)))).)))))))).)))))))....------------------.... ( -20.30) >DroYak_CAF1 19275 120 - 1 UUAACACUUUAAGUUGCUUUUCAUUUUUGGACUUGUUUCUACCUUAAACUUUGAAUGAAUUCGCGCAGAGAGGUGGAGCCUACUUGCAACUUAAGGGCUUUAGCUGGGCUACCCGCUCUU ......(((((((((((..((((....)))).....((((((((....(((((..((....))..))))))))))))).......))))))))))).....(((.((....)).)))... ( -33.80) >consensus UUAACACUUUAAGUUGGCUUUAAUUUUCGGGAU_AUUUUUACCUAAAUUUUUGAAUAAAU__GCUCAGAAAGGUGGAACCAACUUGCAAUUUAAGGCC__________________UGAA ......((((((((((.(((........)))......(((((((....(((((............)))))))))))).........))))))))))........................ (-12.72 = -11.73 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:27 2006