Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,371,205 – 11,371,306 |
Length | 101 |
Max. P | 0.648128 |
Location | 11,371,205 – 11,371,306 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.40 |
Mean single sequence MFE | -22.20 |
Consensus MFE | -13.06 |
Energy contribution | -12.82 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.08 |
Mean z-score | -2.13 |
Structure conservation index | 0.59 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11371205 101 + 22224390 AGGCAAUUAAGA--UA----UCUUUCACUGCAUUUGCCUAUCAAAGAAAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUUGUGCAAAAACUU ((((((...((.--..----.......))....)))))).......................(((((((((..((((((....))))))...)))))))))...... ( -23.40) >DroSec_CAF1 31954 94 + 1 AGGCAAUUAACA----------UUUCACUGCAUUUGCCUAUCGGAA-AAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUU--GCCGAAACUU ((((((....((----------......))...)))))).((((..-.(((.((..((((((((....))))))))((((....))))..)))))--.))))..... ( -23.00) >DroSim_CAF1 13206 99 + 1 AGGCAAUUAAGA--UA----UCUUUCACUGCAUUUGCCUAUCAGAAAAAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUU--GCCGAAACUU .(((((..(((.--..----.))).((((((....))......(((((....((..((((((((....))))))))...))..))))).))))))--)))....... ( -22.50) >DroEre_CAF1 35806 102 + 1 AGGUAAUUUAAAUAUACACGUAUUUAAGUGCUUUUGCCUAUCAUAA-AAGC--CAAUCAUAGUUGCACAACUAUGAGUAGCCCUUUUCAAGUGUU--GCAGAAACUU .....((((((((((....))))))))))(((((((.......)))-))))--...((((((((....))))))))(((((.((.....)).)))--))........ ( -22.30) >DroYak_CAF1 37213 98 + 1 UGGUAAUU-AAGGAUA----UCUUUCACUGCUUUUGCCCAUUAUAA-GAGC-CCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUUAAGUGUU--GCAGAAACUU ..(((.(.-((((...----.)))).).)))((((((.((((..((-(.((-....((((((((....))))))))...)).)))....))))..--)))))).... ( -19.80) >consensus AGGCAAUUAAAA__UA____UCUUUCACUGCAUUUGCCUAUCAGAA_AAACCGCAAUCAUAGUUGCACAACUAUGAGAAGCCCUUUUCAAGUGUU__GCAGAAACUU .(((.........................((....))...................((((((((....))))))))...)))......................... (-13.06 = -12.82 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:57 2006