Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,370,661 – 11,370,781 |
Length | 120 |
Max. P | 0.696104 |
Location | 11,370,661 – 11,370,781 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -20.26 |
Energy contribution | -22.58 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.67 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11370661 120 + 22224390 AGCUUAGAACUUGGCCCUUUAAGUCUAUUAUCUGGCAUAAUCUAUGUGUUUUCUAACUAAGCGAAGGAUAUUACCUUUUCUUUUCUUUUUUUUUGCCAGGUGUAAAAAGAGGGUUAGGUG ........((((((((((((........(((((((((..........(((....))).(((.(((((......))))).)))...........))))))))).....)))))))))))). ( -32.12) >DroSec_CAF1 31302 117 + 1 AGCUUAGAACUUGGCCCUUUAAACCUAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUUAGCGAGGGAUAUUACCAAUUUUUUUCUU---UUUUGCCAGGUGUAAAAAGAGGGUUAGGUG ........((((((((((((........(((((((((.((..((((((...(((..(....)...)))...))))))..))......---...))))))))).....)))))))))))). ( -33.72) >DroSim_CAF1 12556 117 + 1 AGCUUAGAACUUGGCCCUUUAAGCCUAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUCAGCGAGGGAUAUUACCAAUUUUUUUCUU---UUUUGCCAGGUGUAAAAAGAGGGUUAGGCG .((((((..((((((.......)))...(((((((((.((..((((((...(((..(....)...)))...))))))..))......---...)))))))))......)))..)))))). ( -32.30) >DroEre_CAF1 35069 104 + 1 AGCUCAGAACUUGCCCCUUUAAACCUAUUAUCUGGCAUAAUCUUGGUGUUUUCCAAGUUGGAGA----GAUUACCU---------UU---UUUUGCAAGGUGUAAAAAGAGGAAUGGGUG ......................(((((((((((..(.(((.(((((......)))))))))..)----)))..(((---------((---((((((.....)))))))))))))))))). ( -27.70) >DroYak_CAF1 36483 105 + 1 AGCUCAGAACUUGGCCCUUUAAACCGAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUUGGAGA----GAUUACCU--------CUU---UUUUGCAAGGUGUAUGAAGAGGGAUAGGUG ........(((((.((((((........(((((.(((.......((((.(((((.......)))----)).)))).--------...---...))).))))).....)))))).))))). ( -25.06) >consensus AGCUUAGAACUUGGCCCUUUAAACCUAUUAUCUGGCAUAAUCUUGGUGUUUUCUAAGUUAGCGA_GGAUAUUACCU_UU_UUUUCUU___UUUUGCCAGGUGUAAAAAGAGGGUUAGGUG ........((((((((((((........(((((((((....(((((......)))))........((......))..................))))))))).....)))))))))))). (-20.26 = -22.58 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:57 2006